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Commits on Jun 3, 2024

• Add samtools cramsize (#5743)

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  32 peopleauthored
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• bump bcftools to 1.20 (#5730)

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  fellen31

  authored
  a5ba4d5

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• igvreports: adding tracks and indicies to the input channel (#5736)

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  cmatKhan

  and

  SPPearce

  authored
  c62ff46

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• Fix documentation link (#3781)

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  4 peopleauthored
  e0ff65e

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• new modules: Pairtools split (#3628)

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  3 peopleauthored
  1ef7f4f

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• Update mtmtalign (#5742)

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  luisas

  authored
  e2ea4d9

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• Update minimap2 (#5739)

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  fellen31

  authored
  e83b347

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• nf-test pear module: Cannot get property 'baseName' on null object (#5702)

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  3 peopleauthored
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Commits on Jun 2, 2024

• Convert ngscheckmate/patterngenerator to nf-test (#5681)

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  SPPearce

  authored
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• Added tsebra (#5611)

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  GallVp

  authored
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• Update pre-commit hook astral-sh/ruff-pre-commit to v0.4.7 (#5732)

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  renovate[bot]

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  e4d3c98

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• Update pre-commit hook renovatebot/pre-commit-hooks to v37.385.0 (#5733)

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  renovate[bot]

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Commits on May 31, 2024

• Update pre-commit hook renovatebot/pre-commit-hooks to v37.382.4 (#5729)

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  renovate[bot]

  authored
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• Updating samtools (#5708)

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  asp8200

  authored
  04fbbc7

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• Update pre-commit hook renovatebot/pre-commit-hooks to v37.382.3 (#5725)

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  renovate[bot]

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Commits on May 30, 2024

• Make segemehl outputs more specific (#5724)

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  nictru

  authored
  9a6b074

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• Update KrakenUniq container version to include missing dependencies (#5721)

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  jfy133

  and

  CarsonJM

  authored
  e385732

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• Add paraphase (#5709)

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  fellen31

  and

  ramprasadn

  authored
  54b51b6

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• Update pre-commit hook renovatebot/pre-commit-hooks to v37.381.10 (#5719)

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  renovate[bot]

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Commits on May 29, 2024

• Pin dependencies (#5579)

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  renovate[bot]

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• Update pre-commit hook renovatebot/pre-commit-hooks to v37.381.7 (#5714)

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  renovate[bot]

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• Update Gecco to ensure all output files have expected prefix (#5713)

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  jfy133

  and

  CarsonJM

  authored
  f9707f9

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• Move annotsv containers to seqera containers (#5716)

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  nvnieuwk

  authored
  a94ad45

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• Update Bowtie2 meta.yml (#5715)

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  mahesh-panchal

  authored
  e4bad51

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• Faqcs fix metayml, port to nf-test (#5711)

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  tstoeriko

  authored
  7e62c66

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• Update Antismash: Ensure all files (not just folder) use prefix (#5712)

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  jfy133

  and

  CarsonJM

  authored
  39c00d0

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• Iqtree version bump and output fix (#5618)

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  tstoeriko

  authored
  6bcf632

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• Update pre-commit hook renovatebot/pre-commit-hooks to v37.381.6 (#5705)

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  renovate[bot]

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• Update pre-commit hook astral-sh/ruff-pre-commit to v0.4.6 (#5581)

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  renovate[bot]

  authored
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Commits on May 28, 2024

• Remove redundant tximport outputs (#5707)

  pinin4fjords

  authored
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• Fix memory unit in germlinecnvcaller modules (#5686)

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  ramprasadn

  and

  maxulysse

  authored
  cf607b7

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Commits on May 27, 2024

• Update pre-commit hook renovatebot/pre-commit-hooks to v37.377.8 (#5697)

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  renovate[bot]

  authored
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• Added seqkit/rmdup (#5700)

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  GallVp

  authored
  85a37a1

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• Bump Sambamba to 1.0.1 (#5695)

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  scwatts

  and

  SPPearce

  authored
  33b3ce8

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• Added nf-test to explicitly check detection of PacBio adapters (#5698)

  GallVp

  authored
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