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Commits on Oct 15, 2025

• hapROH v0.70 release

  hringbauer

  committed
  2bae0ca

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Commits on Oct 7, 2025

• Update to hapROH v0.70

  hringbauer

  committed
  60d6265

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• Synch Update Harvard Side

  hringbauer

  committed
  920ff4e

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Commits on Oct 6, 2025

• Upgrade to hapROHv0.66. Included pyproj.toml structure

  hringbauer

  committed
  3d42171

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Commits on Apr 12, 2025

• Update Ne Vignette

  hringbauer

  committed
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Commits on Mar 27, 2025

• Vignette Updtates

  hringbauer

  committed
  f69d029

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Commits on Dec 1, 2024

• Synch Updates

  hringbauer

  committed
  16cadfa

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Commits on Nov 15, 2024

• Minor Synch Updates for fresh master branch

  hringbauer

  committed
  e2f5864

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• Harald Bug Fix loading model selection boolean error

  hringbauer

  committed
  74411fb

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• Merge pull request #14 from hyl317/master

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  hringbauer

  authored
  e12fcde

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• Merge branch 'master' into master

  hringbauer

  authored
  6b5710a

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• remove redundaunt code

  hyl317

  committed
  2b7a600

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• fix genotyping error to 1e-3 when coverage is too low to estimate that

  hyl317

  committed
  754425f

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Commits on Nov 5, 2024

• Synch Updates

  hringbauer

  committed
  fda9d1d

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Commits on Oct 14, 2024

• resolve merge conflict

  hyl317

  committed
  0e7ce2f

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• optimization of producing intermediary hdf5 file

  hyl317

  committed
  4a31282

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Commits on May 14, 2024

• low memory hapROH and hapCon

  hyl317

  committed
  ad5d6ea

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Commits on Mar 29, 2024

• now allow missing data in the input target individual

  hyl317

  committed
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Commits on Mar 24, 2024

• added: when loading reference panel for X chromosome, the second haplotype of male samples are now excluded. This needs the meta file to contain a column called sex

  hyl317

  committed
  281b583

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Commits on Mar 22, 2024

• use memory view for the emission array; ~5x speedup

  hyl317

  committed
  17b9e0c

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Commits on Mar 21, 2024

• current memory-saving implementation is still 5x slower than the original implmenetation

  hyl317

  committed
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Commits on Mar 20, 2024

• save current version

  hyl317

  committed
  7261bdc

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• some naive implementation for one-the-fly calculation of emission probability; not fast enough, need further optimization

  hyl317

  committed
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Commits on Jan 22, 2024

• add readthedocs.yaml

  hyl317

  committed
  b922e9f

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Commits on Jul 25, 2023

• Fix Bug with BAMTABLE run (4 instead of expected 3 arguents returned)

  hringbauer

  committed
  e4163a8

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Commits on Jun 21, 2023

• Run PEDSIM RUN

  hringbauer

  committed
  fe9caa0

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Commits on May 5, 2023

• Synch Update

  hringbauer

  committed
  f54f6fa

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Commits on May 4, 2023

• bug fix for bam table

  hyl317

  committed
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Commits on Apr 23, 2023

• Make .ind Datatype str only

  hringbauer

  committed
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Commits on Apr 14, 2023

• Synch Update

  hringbauer

  committed
  cfaefca

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• v54 Updates and Bug Fixes

  hringbauer

  committed
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Commits on Mar 2, 2023

• add ref

  hyl317

  committed
  c88532b

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• add ref

  hyl317

  committed
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Commits on Jan 26, 2023

• Update to v0.54, bug fix np.foat

  hringbauer

  committed
  e3d6e94

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Commits on Nov 20, 2022

• Update hapROH_with_contamination.rst

  hringbauer

  authored
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