Commits

Branch selector

 dev

User selector

All users

Datepicker

All time

Commit History

Commits on Nov 5, 2025

• Merge master to dev (#799)

  Show description for 9d8c203
  fellen31

  authored
  9d8c203

  Copy full SHA for 9d8c203

Commits on Nov 4, 2025

• merge mistakes

  fellen31

  committed
  8fb6b07

  Copy full SHA for 8fb6b07

• Merge remote-tracking branch 'upstream/master' into merge-master-to-dev

  fellen31

  committed
  d644bdb

  Copy full SHA for d644bdb

• Patch release 0.8.1 (Fix unsorted GTF phase blocks from whatshap stats) (#796)

  Show description for 8b7f06d
  fellen31

  authored
  8b7f06d

  Copy full SHA for 8b7f06d

Commits on Oct 31, 2025

• Bump version to 0.9.0dev (#795)

  fellen31

  authored
  b823e84

  Copy full SHA for b823e84

• Merge pull request #783 from genomic-medicine-sweden/dev

  Show description for 6ee1d25
  fellen31

  authored
  6ee1d25

  Copy full SHA for 6ee1d25

Commits on Oct 28, 2025

• Fix process labels (#792)

  Show description for 7586c97
  fellen31

  authored
  7586c97

  Copy full SHA for 7586c97

• Increase yak resources (#791)

  Show description for 6d305d7
  fellen31

  authored
  6d305d7

  Copy full SHA for 6d305d7

Commits on Oct 27, 2025

• Review suggestions (#789)

  Show description for 31ef9d7
  fellen31

  authored
  31ef9d7

  Copy full SHA for 31ef9d7

Commits on Oct 24, 2025

• Fix nf-core pipelines download looking for `test_full` (#788)

  Show description for 10296e7
  fellen31

  authored
  10296e7

  Copy full SHA for 10296e7

• Prep release 0.8.0 (#787)

  Show description for 3ec3650
  fellen31

  authored
  3ec3650

  Copy full SHA for 3ec3650

• Update modules (#785)

  Show description for 48af4e2
  fellen31

  authored
  48af4e2

  Copy full SHA for 48af4e2

Commits on Oct 23, 2025

• Replace filter_variants with VCF_FILTER_BCFTOOLS_ENSEMBLVEP (#786)

  Show description for c988203
  fellen31

  authored
  c988203

  Copy full SHA for c988203

• Update metromap (#784)

  Show description for a6fdcde
  fellen31

  authored
  a6fdcde

  Copy full SHA for a6fdcde

• Fix `null` in SNV filename when running with `--skip_snv_annotation --skip_rank_variants` (#782)

  Show description for 65725e6
  fellen31

  authored
  65725e6

  Copy full SHA for 65725e6

• Add sawfish (#768)

  Show description for 620308d
  fellen31

  authored
  620308d

  Copy full SHA for 620308d

Commits on Oct 22, 2025

• Fix input files with fewer reads than `--alignment_processes` causing silent fails (#779)

  Show description for 014914d
  fellen31

  authored
  014914d

  Copy full SHA for 014914d

• Fix `MODKIT_BEDMETHYLTOBIGWIG` crashing due to unsorted bed (#780)

  Show description for d6ce300
  fellen31

  authored
  d6ce300

  Copy full SHA for d6ce300

• Fix SV merging name collision (#781)

  Show description for 4917d94
  fellen31

  authored
  4917d94

  Copy full SHA for 4917d94

Commits on Oct 6, 2025

• Replace cramino with nf-core module (#774)

  Show description for 25236be
  inemesb

  authored
  25236be

  Copy full SHA for 25236be

Commits on Oct 3, 2025

• Docs : `hifiasm_preset` set based on `preset` not `profile` (#775)

  Show description for 7c1ece6
  pontushojer

  authored
  7c1ece6

  Copy full SHA for 7c1ece6

Commits on Sep 23, 2025

• docs: fix broken link (#770)

  Show description for 9c5bcb2
  pontushojer

  authored
  9c5bcb2

  Copy full SHA for 9c5bcb2

Commits on Sep 15, 2025

• Add bigWig output for methylation (#766)

  Show description for 87c1633
  Schmytzi

  authored
  87c1633

  Copy full SHA for 87c1633

Commits on Sep 11, 2025

• Update paraphase (#765)

  Show description for 1e3fe02
  fellen31

  authored
  1e3fe02

  Copy full SHA for 1e3fe02

Commits on Sep 3, 2025

• Clarify assembly documentation (#760)

  Show description for c3e33f3
  fellen31

  authored
  c3e33f3

  Copy full SHA for c3e33f3

Commits on Aug 22, 2025

• Refactor trio-binning (#746)

  Show description for bc5a79b
  

  fellen31

  and

  Schmytzi

  authored
  bc5a79b

  Copy full SHA for bc5a79b

Commits on Aug 19, 2025

• Refactor `CALL_SNVS` (#758)

  Show description for 6856e70
  fellen31

  authored
  6856e70

  Copy full SHA for 6856e70

Commits on Aug 13, 2025

• Update template to v3.3.2 (#755)

  Show description for a71ce17
  fellen31

  authored
  a71ce17

  Copy full SHA for a71ce17

Commits on Aug 11, 2025

• remove dot

  fellen31

  committed
  13edf90

  Copy full SHA for 13edf90

• change back quotes

  fellen31

  committed
  139528a

  Copy full SHA for 139528a

• Update subworkflows/local/prepare_references/tests/main.nf.test

  fellen31

  authored
  87402c2

  Copy full SHA for 87402c2

Commits on Aug 8, 2025

• Fix missing versions and remove unused imports (#756)

  fellen31

  authored
  b43bf5a

  Copy full SHA for b43bf5a

• change to something less likely to change

  fellen31

  committed
  acf0420

  Copy full SHA for acf0420

• Merge branch 'TEMPLATE' into merge-template-into-dev

  fellen31

  committed
  e36ca54

  Copy full SHA for e36ca54

• Template update for nf-core/tools version 3.3.2

  fellen31

  committed
  49f825b

  Copy full SHA for 49f825b

Pagination

Previous

Next