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Commits on Dec 28, 2022

• Updating submodule smithlab_cpp

  andrewdavidsmith

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Commits on Dec 23, 2022

• Adding a check for whether the output file is good

  andrewdavidsmith

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• Removing the option for partial in hmr-rep

  andrewdavidsmith

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Commits on Dec 17, 2022

• Fixing a bug that prevented hmr-rep from being found

  andrewdavidsmith

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Commits on Nov 11, 2022

• Adding code to ensure that the bins are all the same for data that has multiple replicates

  andrewdavidsmith

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Commits on Nov 3, 2022

• Adding a check for whether the output file can be opened

  andrewdavidsmith

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Commits on Nov 2, 2022

• Updating smithlab_cpp submodule

  andrewdavidsmith

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• Updating submodule

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• Adding some text that should later be presented to users

  andrewdavidsmith

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• Merge branch 'master' of github.com:smithlabcode/dnmtools

  andrewdavidsmith

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• Attempting to fix issues of chroms order not consistent but sorted within each chrom

  andrewdavidsmith

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Commits on Oct 18, 2022

• Update README.md

  andrewdavidsmith

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Commits on Oct 6, 2022

• Adding the new checks for OpenMP

  andrewdavidsmith

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• Adding the new checks for OpenMP

  andrewdavidsmith

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• Changes from v1.2.0 to v1.2.1

  andrewdavidsmith

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• Updating submodule for abismal

  andrewdavidsmith

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Commits on Sep 23, 2022

• Changing version numbers ahead of new release

  andrewdavidsmith

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• Updating abismal submodule for 3.1.0 release

  andrewdavidsmith

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Commits on Sep 22, 2022

• Merge branch 'master' of github.com:smithlabcode/dnmtools

  andrewdavidsmith

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• Updating submodule

  andrewdavidsmith

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Commits on Sep 21, 2022

• selectsites: Fixing a bug that caused an interval at the start of a chromosome with start position 0 to be skipped

  andrewdavidsmith

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Commits on Sep 12, 2022

• Update quickstart.md

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• More updates to installation instructions

  andrewdavidsmith

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• Merge pull request #5 from andrewdavidsmith/update_merge

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  guilhermesena1

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• Merge branch 'smithlabcode:master' into update_merge

  andrewdavidsmith

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• merge: Adding functionality to check for a site tagged as having a mutation and keep the mutation tag on the merged site. This option checks that the mutation exist in at least one file for that si…

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  andrewdavidsmith

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• More updates to documentation for installing dnmtools

  andrewdavidsmith

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• Updating the documentation for installing dnmtools

  andrewdavidsmith

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Commits on Sep 11, 2022

• Update README.md adding a badge.

  andrewdavidsmith

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Commits on Sep 10, 2022

• Merge branch 'master' of github.com:smithlabcode/dnmtools

  andrewdavidsmith

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• Adding explanations for cytosine context to the documentation

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Commits on Sep 9, 2022

• updating the format of counts output in the documentation

  guilhermesena1

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• Suggesting using a conda environment.

  andrewdavidsmith

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Commits on Sep 7, 2022

• Update README.md

  andrewdavidsmith

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Commits on Sep 5, 2022

• Adding badge for docs

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