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Commits on Apr 9, 2020

• change c++11 to gnu++11

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  jchenpku

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  40a72dc

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Commits on Apr 17, 2019

• set version to v0.20.0

  sfchen

  committed
  6ff0ffa

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• revise doc for overlap detection

  sfchen

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  03aa323

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• revise PE base correction and adapter trimming

  sfchen

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  abe7154

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• Merge pull request #144 from PfizerRD/feat/polyXTrimStats

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  sfchen

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Commits on Apr 16, 2019

• merge upstream

  bichkd

  committed
  ce67948

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• revise overlap detection for its limit comparison

  sfchen

  committed
  ccdbddc

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• fixed a tpyo

  sfchen

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  d38e1b3

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• add option overlap_diff_limit_percent

  sfchen

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  ee6bed1

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Commits on Apr 13, 2019

• support filter by average quality score --average_qual

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  sfchen

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Commits on Apr 9, 2019

• fix a bug in fastareader for FASTA with space in name

  sfchen

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  eb3c962

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• Update README.md

  sfchen

  authored
  1bccf90

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• add src/fastareader

  sfchen

  committed
  002b195

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• support multi adapters provided in a FASTA file

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  sfchen

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Commits on Apr 8, 2019

• update adapter detection with more builtin adapters

  sfchen

  committed
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• Update README.md

  sfchen

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  345538a

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• update README for unpaired or failed output

  sfchen

  committed
  ae89bcd

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• check file names to avoid different outputs having same file name

  sfchen

  committed
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Commits on Apr 7, 2019

• support outputing failed reads

  sfchen

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Commits on Apr 6, 2019

• update README for merging introduction

  sfchen

  committed
  969fc33

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• revise merging and support outputing unmerged reads

  sfchen

  committed
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Commits on Apr 4, 2019

• support outputing unpaired reads

  sfchen

  committed
  390f6af

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Commits on Mar 29, 2019

• revise the insert size estimation a little when trim front is enabled

  sfchen

  committed
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• fix the issue that trim_front may affect adapter trimming

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  sfchen

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Commits on Mar 24, 2019

• enable correction for merging mode

  sfchen

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Commits on Mar 21, 2019

• add test

  bichkd

  committed
  fa01864

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• enable trim count

  bichkd

  committed
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• add polyX to json report

  bichkd

  committed
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Commits on Mar 20, 2019

• add counters for polyX trim

  bichkd

  committed
  c86edca

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• allow override of CXX/CXXFLAGS

  bichkd

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Commits on Mar 17, 2019

• rename chastity back to discard_unmerged

  sfchen

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Commits on Mar 16, 2019

• Update README.md

  sfchen

  authored
  fe356aa

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• Update README.md

  sfchen

  authored
  8fa652d

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• Introduce the merge function in README

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  sfchen

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  db0fe91

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• rename discard_unmerged option to chastity

  sfchen

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