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Commits on Dec 16, 2025

• Add missing import

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• New extended_classes module to add functionality to python classes

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• New extended_classes module to add functionality to python classes

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Commits on Dec 15, 2025

• New Amino-acids subset and better compatibility with M-models

  glucksfall

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• Better compatibility with cobra and coralME M-models

  glucksfall

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• Use scipy.optimize.leastsq, numpy.log, new comments, and corrected error message

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• Extended mapping of different ferredoxin BiGG IDs and stoichiometry corrections

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• Added bibtex citation

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• Update README with testing and version info

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Commits on Dec 13, 2025

• Actions only if code is modified

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Commits on Dec 3, 2025

• New quad MINOS binaries for python 3.14

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• Drop use of ipython.display

  glucksfall

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• New arguments to control MEBuilder without a configuration file

  glucksfall

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• New copy method to avoid gurobipy messages

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• quad MINOS binaries recompilation

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• Merge branch 'main' of github.com:jdtibochab/coralme

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• Added sudo to relevant actions

  glucksfall

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• Revise installation steps and requirements in README

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• Refactored tests and consolidated package versions

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Commits on Nov 24, 2025

• Add DOI badge to README

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Commits on Nov 22, 2025

• Install NCBI BLAST in GitHub Actions workflow

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• run all tests

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Commits on Nov 21, 2025

• Hide wget output in pypi.yml

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• Silence wget and pip freeze output in pypi.yml

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Commits on Nov 20, 2025

• Add citation for coralME in README

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Commits on Nov 7, 2025

• Add Python versions 3.14.0 and 3.15.0 to CI

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Commits on Jun 24, 2025

• Fixed monophosphate count in RNA degradation subreactions

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Commits on Jun 2, 2025

• Update README.rst

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Commits on May 6, 2025

• Reverted add_translocases in main

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• Merge pull request #12 from jdtibochab/fva-correction

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• Corrected FVA functionality

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• Added tests for FVA functionality and moved optimization tests to correct location

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Commits on May 2, 2025

• Removed unnecessary versioneer.py script

  glucksfall

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• Added missing 'add_translocases' option

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• Merge pull request #11 from jdtibochab/release-testing

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