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Commits on Aug 1, 2017

• Update license

  lakigigar

  authored
  0383fae

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Commits on Jun 3, 2017

• Update README.md

  lakigigar

  authored
  950d889

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• Update README.md

  lakigigar

  authored
  4ee2f04

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Commits on Mar 20, 2017

• minor fixes

  pmelsted

  committed
  1e0e112

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Commits on Mar 19, 2017

• Minor fixes

  pmelsted

  committed
  fc790e2

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• Updates kseq

  pmelsted

  committed
  b554dee

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• Merge branch 'fusion' into devel

  pmelsted

  committed
  647dc83

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• Fixes remaining pseudobam issues

  pmelsted

  committed
  dad01f5

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Commits on Mar 17, 2017

• Switch back to uniform starting values of alphas

  pmelsted

  committed
  fae6a80

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Commits on Mar 7, 2017

• Update README.md

  pmelsted

  authored
  cfbf574

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Commits on Jul 11, 2016

• Modifies output to help with parsing

  pmelsted

  committed
  4b3ae8c

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Commits on Jun 24, 2016

• changes output, fixed SPLIT cases

  pmelsted

  committed
  61311d8

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Commits on Jun 15, 2016

• taking back mappability req

  pmelsted

  committed
  6a0ca0f

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• Merge branch 'devel' into fusion

  pmelsted

  committed
  d745a2f

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Commits on Jun 3, 2016

• Uses sparse output for batch data

  pmelsted

  committed
  a231803

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Commits on Jun 2, 2016

• Merge pull request #110 from pachterlab/devel

  Show description for b1a1f25
  pmelsted

  committed
  b1a1f25

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• Fixes citation

  pmelsted

  committed
  d3cd2ab

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• Merge branch 'umi' into devel

  pmelsted

  committed
  17d3dc0

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• Merge branch 'strand' into devel

  pmelsted

  committed
  b572bff

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• bump version to 0.43.0

  pmelsted

  committed
  e85d927

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• Fixes bias correction when using strand specific

  pmelsted

  committed
  63cdb3b

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• Fixes issue with UMI files

  pmelsted

  committed
  0cdfd23

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Commits on May 26, 2016

• Fixes wrong counting of numreads mapping and disables fragment length trimming in UMI mode

  pmelsted

  committed
  58af342

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Commits on May 19, 2016

• Fixes issue with streams not having move constructers in gcc (grumble)

  pmelsted

  committed
  30f466d

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• Fixed mistake

  pmelsted

  committed
  c9d3dbe

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Commits on May 14, 2016

• Somewhere over Greenland

  pmelsted

  committed
  80cb06c

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Commits on May 12, 2016

• Fixes segfault

  pmelsted

  committed
  ea794f7

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• Prepare for batch mode

  pmelsted

  committed
  1fcdcd8

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Commits on May 11, 2016

• Preparing for bias update wrt strandedness

  pmelsted

  committed
  1b5303b

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Commits on May 9, 2016

• More stringent filtering

  pmelsted

  committed
  5b45bf9

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Commits on May 6, 2016

• union

  pmelsted

  committed
  1a0e87a

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• Fixes bug with lastEC

  pmelsted

  committed
  37876dc

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Commits on May 5, 2016

• Adds union filter

  pmelsted

  committed
  a94ff42

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Commits on May 4, 2016

• Leaving Hudson Bay

  pmelsted

  committed
  83d0aba

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• Somewhere over Hudson Bay

  pmelsted

  committed
  cc89677

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