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Commits on Jul 22, 2025

• Added DockerHub info to README

  jorvis

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• Updated docker files for 0.12.1 release

  jorvis

  committed
  5b764f4

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• Added changelog entries for 0.12.1 release

  jorvis

  committed
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Commits on Feb 11, 2025

• Quick little utility script for tattoo!

  jorvis

  committed
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Commits on Feb 1, 2025

• Script now handles prodigal input files which don't lead with 'ID=' (fixes issue #83)

  jorvis

  committed
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Commits on Oct 22, 2024

• Updated to remove deprecated 'U' file open mode

  jorvis

  committed
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Commits on Oct 17, 2024

• Updated docker files for 0.12.0

  jorvis

  committed
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• Updated changelog for 0.12.0 release

  jorvis

  committed
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Commits on Aug 19, 2024

• Merge branch 'master' of github.com:jorvis/biocode

  jorvis

  committed
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• Added initial version of add_blast_results_to_gff3_product.py script

  jorvis

  committed
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Commits on May 22, 2024

• Merge branch 'master' of github.com:jorvis/biocode

  jorvis

  committed
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• Added script: fasta/export_fasta_ids.py

  jorvis

  committed
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Commits on Jan 4, 2024

• Critical fix to strip_fasta_headers_after_regex.py. Previous version didn't have newlines before headers after the first one

  jorvis

  committed
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• Added script: fasta/strip_fasta_headers_after_regex.py

  jorvis

  committed
  49cfa87

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• Minor: Fixed description for filter_fasta_by_header_regex.py

  jorvis

  committed
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Commits on Nov 17, 2023

• Updated docker image to use ubuntu 22.04 as base, and corrected R module phyloseq installation syntax

  jorvis

  committed
  4a8d3b6

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• Updated docker image for 0.11.0

  jorvis

  committed
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• documentation: usage example command added

  jorvis

  committed
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• Updated CHANGELOG for 0.11.0 release

  jorvis

  committed
  3efc84c

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• Restored perl version of fasta_size_report so existing pipelines don't break

  jorvis

  committed
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• Corrected issue where script assumed paths passed were relative to the script

  jorvis

  committed
  4c0fbde

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• Merge branch 'master' of github.com:jorvis/biocode

  jorvis

  committed
  793e432

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• Merge pull request #80 from RPINerd/master

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  jorvis

  authored
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• Renamed docker build script to clarify its purpose

  jorvis

  committed
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Commits on Jul 15, 2023

• Added commas to integer outputs to make (what are typically) large numbers easier to read

  jorvis

  committed
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Commits on Jul 14, 2023

• Progress interval lines now print on same line, current file processing also printed on stderr

  jorvis

  committed
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• Added (optional) progress interval output to fastq_simple_stats.py

  jorvis

  committed
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Commits on Feb 20, 2023

• Added general utility script to check the uniform shape of a data matrix file

  jorvis

  committed
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Commits on Feb 14, 2023

• Finalized conversion and tested

  RPINerd

  committed
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Commits on Feb 8, 2023

• Set up the framework and bulk of the translation

  RPINerd

  committed
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• Initial setup of conversion, documentation

  RPINerd

  committed
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Commits on Nov 18, 2022

• Merge branch 'master' of github.com:jorvis/biocode

  jorvis

  committed
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• Added validate mate pairing script for FASTQ files

  jorvis

  committed
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Commits on Nov 17, 2022

• Utility daemon for sequenceserver

  jorvis

  committed
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Commits on Oct 6, 2022

• Documentation was missing the --mode option in the example

  jorvis

  committed
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