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Commits on Jun 16, 2025

• Checkv version bump (#8648)

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  Joon-Klaps

  authored
  53db90b

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• osfclient/fetch: new module (#8612)

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  JacquelineAldridge

  and

  LeonHafner

  authored
  6e05c2b

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• Add the deacon/index tool. (#8640)

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  mberacochea

  authored
  596fc4c

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• MultiSeqDemux (#8638)

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  LuisHeinzlmeier

  and

  nictru

  authored
  ea8d54b

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• Add additional_allelecounter_flags option to ASCAT (#8644)

  SPPearce

  authored
  00d1ceb

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• patch incorrect snapshot mmseqs-easycluster (#8645)

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  Joon-Klaps

  and

  georgiakes

  authored
  43c23d8

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• New Module: MMseqs-easycluster (#8607)

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  Joon-Klaps

  and

  georgiakes

  authored
  8c007e2

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• New Module: vclust/prefilter (#8642)

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  Joon-Klaps

  authored
  6a852e5

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• Raw2ometiff (#8050)

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  CaroAMN

  and

  famosab

  authored
  75ba6e1

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Commits on Jun 15, 2025

• HTODemux (#8637)

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  LuisHeinzlmeier

  and

  nictru

  authored
  e793890

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Commits on Jun 14, 2025

• Add new module called rundbcan and subcommands(database, cazymeannotation, easycgc, easysubstrate) (#8216)

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  Xinpeng021001

  and

  SPPearce

  authored
  d06da24

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Commits on Jun 13, 2025

• Add metacache query module (#8537)

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  sofstam

  and

  Gullumluvl

  authored
  f417279

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• read_format should be an input (#8633)

  mapo9

  authored
  b1e1040

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• Add back nextflow.config for the subworkflow parameters (#8634)

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  SPPearce

  authored
  a4b6cb0

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• Add force-cube module (#8629)

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  Felix-Kummer

  authored
  7630e27

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Commits on Jun 12, 2025

• Fix repeatmasker bug (#8495)

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  4 peopleauthored
  ea30c86

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• refactor quartonotebook (#8623)

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  mahesh-panchal

  and

  fasterius

  authored
  ee7b6a0

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Commits on Jun 11, 2025

• add crabs/insilicopcr (#8595)

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  famosab

  and

  LouisLeNezet

  authored
  e648108

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• PICARD_BEDTOINTERVALLIST add stub and fix for nf language (#8585)

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  famosab

  and

  LouisLeNezet

  authored
  19a94db

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Commits on Jun 10, 2025

• chore: update fgbio to 2.5.21 (#8608)

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  nh13

  and

  SPPearce

  authored
  6d60190

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• Updating nf-core/modules to include ontologies in meta.yml for inputs & outputs (#8045)

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  weber8thomas

  and

  mirpedrol

  authored
  48c86d9

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• emu/abundance: update (#8597)

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  JacquelineAldridge

  and

  famosab

  authored
  8c82b01

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• Quartonotebook update (#8603)

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  fasterius

  and

  mahesh-panchal

  authored
  7381027

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• Add Vizgenpostprocessing/preparesegmentation module (#8575)

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  mcmero

  and

  LouisLeNezet

  authored
  e08e94b

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Commits on Jun 9, 2025

• Update `ABACAS` (#8613)

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  LouisLeNezet

  and

  LouisLeNezet

  authored
  dbf3f32

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• Update to fcsgz version and tests (#8418)

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  DLBPointon

  and

  LouisLeNezet

  authored
  7726620

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• Add note to samtools modules that task cpus is 1 + --threads (#8601)

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  mahesh-panchal

  authored
  d090922

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• MultiQC 1.29 update (#8538)

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  apeltzer

  and

  LouisLeNezet

  authored
  e594e9d

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Commits on Jun 8, 2025

• Update mgikit version (#8609)

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  ziadbkh

  authored
  62cfc1f

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Commits on Jun 6, 2025

• LINKS - Update meta.yml (#8611)

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  nschan

  authored
  bd049fd

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Commits on Jun 5, 2025

• 8541 update glnexus (#8589)

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  awgymer

  and

  jfy133

  authored
  fc11d63

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• Fix prettier linting in meta.yaml of DIAMOND_MAKEDB (#8606)

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  jfy133

  authored
  dc71da5

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• Bump DIAMOND versions (#8604)

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  jfy133

  authored
  aecbc87

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• Fix prettier sampe samse meta.yml (#8605)

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  daisymut

  authored
  8204ea0

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Commits on Jun 4, 2025

• Update all modules that start with A (#8578)

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  3 peopleauthored
  e2684f2

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