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Commits on Dec 27, 2023

• Remove troubleshooting section

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• Merge pull request #6 from jpalmer37/dev

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Commits on Dec 19, 2023

• minor README changes

  jpalmer37

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  38cfe5b

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• minor improvements / changes

  jpalmer37

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• updated README

  jpalmer37

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Commits on Dec 13, 2023

• improved fix_aa_muts.py, made it more flexible

  jpalmer37

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• remove extract_sequences.py

  jpalmer37

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• reduced changes to only those necessary for concat workflow

  jpalmer37

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Commits on Dec 7, 2023

• updated extract_sequences.py

  jpalmer37

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Commits on Dec 6, 2023

• revert change to default conda

  jpalmer37

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• changes

  jpalmer37

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Commits on Oct 16, 2023

• Add ability to adjust AUGUR_RECURSION_LIMIT env var

  j3551ca

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Commits on May 4, 2023

• Bug fix version

  j3551ca

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• Correct thread spec option

  j3551ca

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Commits on Dec 30, 2022

• Increase cpu limit

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  j3551ca

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• Add thread spec

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Commits on Nov 2, 2022

• Add environments folder

  j3551ca

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• Delete environment.yml

  j3551ca

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• Delete ENV.yml

  j3551ca

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• Delete ph

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• Create ENV.yml

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• Create environment.yml

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• Create ph

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Commits on Oct 19, 2022

• Update troubleshooting section

  j3551ca

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• Add troubleshooting section

  j3551ca

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• Update ENV.yml

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Commits on Oct 12, 2022

• Update ENV.yml

  j3551ca

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• Update ENV.yml

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Commits on Oct 11, 2022

• Update to use specific conda env

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  j3551ca

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• Add platform-specific yaml

  j3551ca

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Commits on Aug 12, 2022

• Remove quotations from work_dir value

  j3551ca

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• Add conda cache to help message

  j3551ca

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• Update version

  j3551ca

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• Specify CPUs for align process according to Dan Fornika's suggestion

  j3551ca

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• Update main.nf

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