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Commits on Feb 14, 2023

• derive annotation from .db packages for affy (#2825)

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  Jonathan Manning

  and

  maxulysse

  authored
  bef0ff1

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Commits on Feb 13, 2023

• New module: vcflib/vcffilter (#2852)

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  zachary-foster

  authored
  35f2fee

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• Fixed the conda syntax because params.enable_conda is deprecated (#2872)

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  muffato

  authored
  7eafcf8

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• New subworkflow vcf_impute_glimpse (#2858)

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  LouisLeNezet

  and

  nvnieuwk

  authored
  4f1503e

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• Subworkflow for phylogenetic placement: `fasta_newick_epang_gappa` (#2856)

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  erikrikarddaniel

  and

  d4straub

  authored
  6ad90f5

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• Glimpse_ligate input management (#2870)

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  LouisLeNezet

  and

  nvnieuwk

  authored
  29c7b89

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Commits on Feb 11, 2023

• Gunc/merge (#2868)

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  jfy133

  and

  maxulysse

  authored
  93f8308

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Commits on Feb 10, 2023

• Added new module: bbmap/sendsketch (#2791)

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  3 peopleauthored
  60bfe77

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• Glimpse phase (#2869)

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  LouisLeNezet

  authored
  3c742fe

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Commits on Feb 9, 2023

• new module rtgtools/format (#2862)

  nvnieuwk

  authored
  3a19196

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Commits on Feb 8, 2023

• SNPEFF_DOWNLOAD - change output folder (#2855)

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  maxulysse

  authored
  aeefdd1

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Commits on Feb 7, 2023

• New snpeff/download module (#2851)

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  maxulysse

  authored
  03eae88

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• Add taxpasta standardise (#2831)

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  3 peopleauthored
  3f03f6c

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• New ensemblvep/download module (#2847)

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  maxulysse

  authored
  bea3ca9

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• Igv js (#2846)

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  mirpedrol

  authored
  ce166d3

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• Add haplotigs as possible input (#2834)

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  ksenia-krasheninnikova

  and

  Ksenia Krasheninnikova

  authored
  7f59e57

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Commits on Feb 6, 2023

• add pre-commit hook for prettier to modules repo (#2841)

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  mirpedrol

  and

  mashehu

  authored
  c9968ab

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• Vg/index (#2840)

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  nvnieuwk

  authored
  d1ea478

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Commits on Feb 3, 2023

• Update baktadbdownload: Correct output name (#2833)

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  jasmezz

  authored
  ade45f0

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• Added Canu module (#2824)

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  3 peopleauthored
  2fc546b

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• bump shinyngs in relevant modules (#2827)

  

  Jonathan Manning

  authored
  28c61ab

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Commits on Feb 2, 2023

• Limma (#2820)

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  Jonathan Manning

  authored
  70ac5eb

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Commits on Feb 1, 2023

• module: cnvkit/target (#2821)

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  adamrtalbot

  and

  maxulysse

  authored
  4d26337

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• New module: Admixture (#2816)

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  atrigila

  and

  nvnieuwk

  authored
  0070c63

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• module: cnvkit/export (#2817)

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  adamrtalbot

  authored
  89129a7

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• module: cnvkit/access (#2818)

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  adamrtalbot

  and

  maxulysse

  authored
  3a4ecf4

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• Glimpse concordance (#2815)

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  LouisLeNezet

  and

  nvnieuwk

  authored
  ff0924e

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Commits on Jan 31, 2023

• Add new module sgdemux (#2812)

  sam-white04

  authored
  6624858

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• new module vg/construct (#2813)

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  3 peopleauthored
  d4e31c1

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• new module: cnvkit/call (#2811)

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  adamrtalbot

  authored
  2f2a92e

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Commits on Jan 30, 2023

• Add affy/justrma module (#2790)

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  Jonathan Manning

  and

  adamrtalbot

  authored
  25049ae

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• Bump shinyngs to address palette issues (#2798)

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  Jonathan Manning

  authored
  5e38ee9

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• Make untar work for non-gzipped tars (#2796)

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  3 peopleauthored
  cc1f997

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• New module: Graphtyper/genotype (#2727)

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  zachary-foster

  and

  nvnieuwk

  authored
  f76b3f2

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Commits on Jan 29, 2023

• add a new module sickle (#2757)

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  BioInf2305

  and

  nvnieuwk

  authored
  b68099a

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