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Commits on May 2, 2025

• change links test-data to sarscov (#8366)

  nschan

  authored
  d0fcd22

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Commits on May 1, 2025

• Fix typo in conda environment.yml (#8382)

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  ewels

  authored
  f0c766a

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Commits on Apr 30, 2025

• Bump and fix trust4 (#8381)

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  ggabernet

  authored
  5dffd97

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• Allow iqtree to work with multiple input alignments (#8379)

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  zachary-foster

  and

  Zachary Foster

  authored
  2ae11ef

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• Update mapAD to v0.45.0 (#8362)

  jch-13

  authored
  b03f5d4

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• add new module rtgtools/bndeval (#8365)

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  kubranarci

  authored
  0fb653b

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• Move extended arguments to end of krakenuniq command line. (#8380)

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  muniheart

  and

  jfy133

  authored
  76f0450

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Commits on Apr 29, 2025

• Add stub and stub test to snpsift/split module (#8370)

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  jonasscheid

  and

  LouisLeNezet

  authored
  f0fcc56

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• Unify Summarized Experiment (#7869)

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  atrigila

  and

  pinin4fjords

  authored
  1f00822

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• Pypgx small batch update (#8377)

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  Jorisvansteenbrugge

  authored
  512f023

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Commits on Apr 28, 2025

• Add real tests for GTDB Tk (#8371)

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  jfy133

  and

  SPPearce

  authored
  bf8df3a

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• Migrate `kmcp/merge` to nf-test (#8364)

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  LouisLeNezet

  and

  LouisLeNezet

  authored
  ed6cb26

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Commits on Apr 25, 2025

• add barcodewhitelist option (#8368)

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  mapo9

  authored
  965e3e5

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• Update differential subworkflows to take list of contrasts as input (#8346)

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  suzannejin

  authored
  6ac0725

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• pbmm2 - change label (#8367)

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  jkh00

  and

  ra25wog

  authored
  09d3392

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• Migrate `khmer/uniquekmers` to nf-test (#8363)

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  LouisLeNezet

  and

  LouisLeNezet

  authored
  ff2075c

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Commits on Apr 24, 2025

• Added module picard MeanQualityByCycle (#8289)

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  3 peopleauthored
  a2f12b3

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• bump shinyngs (#8358)

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  atrigila

  authored
  d802eff

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• Swap sequencetools/pileupcaller to nf-test (#8359)

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  SPPearce

  and

  LouisLeNezet

  authored
  5490c1a

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• Migrate `cellrangeratac/mkref` to nf-test (#8352)

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  max-laurent

  and

  SPPearce

  authored
  429bd86

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• Added module picard CollectAlignmentSummaryMetrics (#8287)

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  3 peopleauthored
  f101ca8

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• chore(deps): update actions/setup-python digest to a26af69 (#8360)

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  renovate[bot]

  authored
  b65489b

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• new module starfusion build (#8107)

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  4 peopleauthored
  ba2c969

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Commits on Apr 23, 2025

• Replaced params.use_gpu with a workflow variable (#8302)

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  GallVp

  authored
  e55eae4

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• wildcard expansion in vsearch bug fix (#8307)

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  tom-brekke

  and

  Joon-Klaps

  authored
  f10b246

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• Deprecate `kat/hist` and migrate it to nf-test (#8351)

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  3 peopleauthored
  e2cacb2

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• Add jellyfish/dump (#8356)

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  vagkaratzas

  authored
  5487be6

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• add new module - rtgtools/svdecompose (#8329)

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  3 peopleauthored
  e71f6b6

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• Add module amulety/balmpaired (#8350)

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  ggabernet

  authored
  8d23788

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• Add jellyfish count (#8337)

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  vagkaratzas

  authored
  14a0ed2

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• Deduplicate args in picard/collectinsertsizemetrics (#8355)

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  nvnieuwk

  authored
  980a496

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Commits on Apr 22, 2025

• ✨ Add VueGen module files (#8190)

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  sayalaruano

  authored
  f3f8598

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• Add module amulety/antiberta2 (#8330)

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  ggabernet

  and

  apeltzer

  authored
  52948eb

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• Bump versions amulety antiberty (#8348)

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  ggabernet

  authored
  ab63efb

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• add module amulety esm2 (#8335)

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  ggabernet

  and

  nvnieuwk

  authored
  4b78419

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