Case Studies: Copy-Number-Aware Differential Gene Expression Analysis with DeConveil.
This repository contains case studies demonstrating the application and performance of the DeConveil computational framework.
The included studies cover:
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Performance evaluation on simulated data — benchmarking DeConveil’s accuracy and robustness using controlled simulated datasets;
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Application to TCGA aneuploid Cancer cohorts — testing DeConveil on real-world datasets from The Cancer Genome Atlas (TCGA) to assess its performance in complex aneuploid tumor samples.
Check out our preprint on: bioRxiv preprint.