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Commits on Jun 2, 2023

• Created fcs subworkflow (#3477)

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  scorreard

  and

  maxulysse

  authored
  e4eac51

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• add docker.io (#3484)

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  maxulysse

  authored
  5b80cb5

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• add docker.io (#3483)

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  maxulysse

  authored
  9d186ef

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• FIX: remove mem assignement for SAMTOOLS_SORT (#3480)

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  maxulysse

  authored
  a0f7be9

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• Scatterintervalsbyns (#3478)

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  nvnieuwk

  authored
  ab72e4b

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Commits on Jun 1, 2023

• FIX: Add error_retry label (#3473)

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  maxulysse

  authored
  80dbd95

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Commits on May 31, 2023

• suffix would be the extension of first file (#3464)

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  ekushele

  authored
  c1532c7

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• Add purecn/normaldb test data to config and fix paths in tests (#3465)

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  aldosr

  authored
  554111c

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• Added genomad/download and genomad/endtoend modules (#3451)

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  CarsonJM

  and

  sateeshperi

  authored
  ca813f3

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• Add default retry strategy to flaky bbsplit module (#3471)

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  drpatelh

  authored
  e228790

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• bump fastp (#3470)

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  matthdsm

  authored
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Commits on May 30, 2023

• Fix bug in FASTQ_FASTQC_UMITOOLS_FASTP subworkflow (#3469)

  drpatelh

  authored
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• Varlociraptor preprocess (#3468)

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  FriederikeHanssen

  and

  sateeshperi

  authored
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• add varlociraptor estimate alignment properties (#3467)

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  FriederikeHanssen

  and

  sateeshperi

  authored
  fdb835e

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• Purecn/normaldb (#3129)

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  aldosr

  and

  lbeltrame

  authored
  a9ad686

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Commits on May 29, 2023

• Controlfreec makegraph ploidy (#3463)

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  FriederikeHanssen

  authored
  83ddd59

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• Fix pacbio modules (#3462)

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  sguizard

  authored
  0513f93

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• update stubs for samtools faidx (#3461)

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  ramprasadn

  authored
  fd74241

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Commits on May 26, 2023

• feat update environment hmtnote (#3459)

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  Lucpen

  and

  [email protected]

  authored
  a746b93

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• Fix wrong pattern in meta.yml for MaltExtract (#3458)

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  jfy133

  authored
  46b55e5

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• add module: PhiSpy (#3453)

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  jvfe

  and

  nvnieuwk

  authored
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Commits on May 25, 2023

• Fix database file pickup for GANON modules (#3457)

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  jfy133

  authored
  f61e38c

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• Kmcp merge module (#3449)

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  sofstam

  authored
  0fbbd07

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• update samtools/faidx (#3454)

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  ramprasadn

  authored
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Commits on May 24, 2023

• Sentieon applyvarcal module (#3448)

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  asp8200

  authored
  49a6439

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Commits on May 23, 2023

• update input parameters for expansionhunter and stranger (#3447)

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  ramprasadn

  authored
  0260e5d

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• Sentieon VarCal (#3446)

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  asp8200

  authored
  641b422

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• update input parameters (#3445)

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  ramprasadn

  authored
  3ffae35

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Commits on May 22, 2023

• new module ngsbits/samplegender (#3444)

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  nvnieuwk

  and

  sateeshperi

  authored
  e8d164f

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• Purecn/coverage (#3132)

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  3 peopleauthored
  92e0f72

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• update input params for modules (#3439)

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  ramprasadn

  authored
  0460d31

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• update input params for picard modules (#3432)

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  ramprasadn

  authored
  735e1e0

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• New Module: snpsift/dbnsfp (#3435)

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  LlaneroHiboreo

  and

  ramprasadn

  authored
  089ebf2

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• Update input params for gatk4 modules (#3430)

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  ramprasadn

  authored
  2df2a11

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• update input params for bcftools (#3429)

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  ramprasadn

  authored
  0435e4e

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