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Tutorial for scRNA-seq data analysis beginners using R

227 73 Updated Mar 5, 2025

resources for learning bioinformatics

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https://www.sc-best-practices.org

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Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

Jupyter Notebook 1,527 480 Updated Dec 11, 2022

Python best practices guidebook, written for humans.

Batchfile 29,340 5,902 Updated Jul 29, 2024

Python Data Science Handbook: full text in Jupyter Notebooks

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All Algorithms implemented in Python

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R for data science: a book

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DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing data.

270 40 Updated Oct 15, 2025

Collection of bioinformatics training materials

Python 1,076 192 Updated Oct 26, 2025

๐Ÿ”ฌ Path to a free self-taught education in Bioinformatics!

6,500 1,057 Updated Apr 8, 2024

Links to resources related to bioinformatics and data analysis.

27 6 Updated Jul 24, 2025

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

6,474 643 Updated Oct 24, 2025

Statistical data visualization in Python

Python 13,555 2,043 Updated Jul 10, 2025

Painlessly create beautiful matplotlib plots.

Python 1,704 146 Updated Jan 31, 2019

Bioinformatics one liners from Ming Tang

495 133 Updated Oct 4, 2020

tools and notes for spatial omics

328 60 Updated Feb 26, 2025

List of software/websites/databases/other stuff for genome engineering

555 122 Updated Jun 20, 2024

An Introduction to Statistical Learning (James, Witten, Hastie, Tibshirani, 2013): Python code

Jupyter Notebook 4,366 2,421 Updated Oct 27, 2022

This repository contains the exercises and its solution contained in the book "An Introduction to Statistical Learning" in python.

Jupyter Notebook 2,461 611 Updated Sep 23, 2024

๐Ÿ† A ranked list of awesome machine learning Python libraries. Updated weekly.

22,776 3,035 Updated Nov 7, 2025
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