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Commits on Nov 22, 2023

• Update svdb query parameters (#4363)

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  ramprasadn

  authored
  2a35cf4

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• label DIAMOND_BLASTX as process_high (#4359)

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  LilyAnderssonLee

  and

  sateeshperi

  authored
  fff2c3f

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• nf-tests for sortmerna (#4382)

  sateeshperi

  authored
  a20b6b1

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• Add samples to bcftools/reheader + nf-tests (#4381)

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  nvnieuwk

  authored
  f99333e

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• nf-test for salmon (#4380)

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  maxulysse

  authored
  ce801ce

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• add nf-tests for rsem/calculateexpression and rsem/preparereference (#4377)

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  maxulysse

  authored
  8ec12d8

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• add missing closing quote in deprecation comment (#4378)

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  mashehu

  authored
  104435b

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• Add call to action comment on pytest-workflow runs (#4151)

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  3 peopleauthored
  26dadb1

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• Fix gprofiler2 (#4364)

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  WackerO

  and

  SPPearce

  authored
  38e8c36

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Commits on Nov 21, 2023

• Add NONPAREIL/SET and add args for NONPAREIL/CURVE (#4365)

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  jfy133

  authored
  729335d

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• Convert Kraken2 tests to nf-test (#4201)

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  Aratz

  authored
  d6549f4

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• Mmseqs createdb and linclust container version upgrade + nf-tests (#4368)

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  vagkaratzas

  authored
  18a43d3

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• fix: correct krakenuniq/preloadkrakenuniq output to be FASTA + nf-test (#4356)

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  Midnighter

  authored
  8bbaa88

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• Dragonflye: version update and polish the draft genome with short-reads. (#4316)

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  Daniel-VM

  authored
  a3ae45e

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• FEAT: Bump MultiQC to 1.18 (#4367)

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  maxulysse

  and

  drpatelh

  authored
  1537442

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• More bioconda sentieon (#4357)

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  asp8200

  authored
  725deeb

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Commits on Nov 20, 2023

• Added optional flow field output and increase version number for cellpose (#3975)

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  FloWuenne

  authored
  0975c63

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Commits on Nov 19, 2023

• Update MAFFT module with new arguments and tests (#4354)

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  Joon-Klaps

  and

  sateeshperi

  authored
  c0a22ac

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• Feat/bam_stats_samtools subw nf-test (#4138)

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  Joon-Klaps

  and

  edmundmiller

  authored
  0da36ce

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Commits on Nov 17, 2023

• Added .ngc support for sratools fasterqdump and prefetch (#4303)

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  4 peopleauthored
  b1d2002

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• .nf-test -> nf-test (#4355)

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  maxulysse

  authored
  c7e5181

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• Fix Deseq2 and limma output IDs (#4340)

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  WackerO

  and

  pinin4fjords

  authored
  25047aa

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• Update version (#4352)

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  mahesh-panchal

  authored
  d6ca9ee

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• Patch hifiasm (#4322)

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  mahesh-panchal

  authored
  25e80fb

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Commits on Nov 16, 2023

• add mudskipper/index and mudskipper/bulk (#4348)

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  anoronh4

  authored
  b2946b2

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• Adding fix for LD_LIBRARY_PATH in singularity mode (#4347)

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  3 peopleauthored
  9e16ade

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• Restructure and rename NONPAREIL and add NONPAREIL_CURVE (#4341)

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  jfy133

  and

  sateeshperi

  authored
  56ace4d

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Commits on Nov 15, 2023

• PLINK2 add nf-tests and fix broken pytests (#4025)

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  3 peopleauthored
  94afafc

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• add samtools/index nf-test test (#4337)

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  maxulysse

  and

  sateeshperi

  authored
  5394565

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• Kallisto quant tidy up (#4334)

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  3 peopleauthored
  bdc2a97

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• add qualimap/rnaseq nf-test test (#4338)

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  maxulysse

  and

  sateeshperi

  authored
  7293949

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• Add DESeq2 and limma model to output (#4329)

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  WackerO

  and

  pinin4fjords

  authored
  a0ebc6b

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• Add meta map and update process label to mitohifi/findmitoreference (#4336)

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  mahesh-panchal

  authored
  193b090

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• Add gprofiler2 module (#4294)

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  WackerO

  and

  pinin4fjords

  authored
  6b99d85

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Commits on Nov 14, 2023

• Update deepbgc (#4324)

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  jasmezz

  authored
  f5d8dec

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