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The scipy 1.13 release caused failures of silhouette tests.
___________________ Silhouette_Tester.test_silhouette_alist ____________________
[gw2] linux -- Python 3.9.19 /home/runner/micromamba/envs/test/bin/python3.9
self = <esda.tests.test_silhouette.Silhouette_Tester testMethod=test_silhouette_alist>
def test_silhouette_alist(self):
known = numpy.array(
[
0.0,
0.0,
0.22434244,
0.0,
0.0,
0.0,
-0.07589293,
-0.07589293,
0.0,
0.41331324,
0.41331324,
0.0,
0.0,
0.11703681,
0.0,
0.11703681,
0.27065991,
0.27065991,
0.27065991,
0.27065991,
0.0,
0.27065991,
0.0,
0.0,
-0.07441639,
-0.07441639,
0.0,
0.0,
0.0,
0.0,
0.41576712,
0.41576712,
-0.06657343,
0.0,
0.0,
-0.06657343,
0.0,
0.0,
0.0,
0.0,
]
)
test = silhouettes.silhouette_alist(
self.X, self.groups, self.w.to_adjlist(drop_islands=True)
)
> numpy.testing.assert_allclose(known, test.silhouette, rtol=RTOL, atol=ATOL)
esda/tests/test_silhouette.py:193:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
args = (<function assert_allclose.<locals>.compare at 0x7fb40e736ee0>, array([ 0. , 0. , 0.22434244, 0. ...76712, -0.06657343, 0. , 0. ,
-0.06657343, 0. , 0. , 0. , 0. ]))
kwds = {'equal_nan': True, 'err_msg': '', 'header': 'Not equal to tolerance rtol=1e-05, atol=1e-07', 'verbose': True}
@wraps(func)
def inner(*args, **kwds):
with self._recreate_cm():
> return func(*args, **kwds)
E AssertionError:
E Not equal to tolerance rtol=1e-05, atol=1e-07
E
E Mismatched elements: 6 / 40 (15%)
E Max absolute difference: 0.27065991
E Max relative difference: 1.
E x: array([ 0. , 0. , 0.224342, 0. , 0. , 0. ,
E -0.075893, -0.075893, 0. , 0.413313, 0.413313, 0. ,
E 0. , 0.117037, 0. , 0.117037, 0.27066 , 0.27066 ,...
E y: array([ 0. , 0. , 0.224342, 0. , -0.075893, 0. ,
E -0.075893, 0. , 0. , 0.413313, 0.413313, 0. ,
E 0. , 0. , 0.117037, 0.117037, 0.27066 , 0.27066 ,...
../../../micromamba/envs/test/lib/python3.9/contextlib.py:79: AssertionErrorcc @ljwolf
ljwolf
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