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Commits on May 28, 2025

• version update

  Yenaled

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• Merge pull request #289 from kymeratx/master

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  Yenaled

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Commits on Apr 17, 2025

• Passing data frames to data.table melt/dcast is deprecated. Pre-cast these data frames to data.table before calling the data.table function.

  rkarnik-kymeratx

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Commits on Jul 25, 2023

• Merge pull request #1 from pachterlab/master

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  rkarnik-kymeratx

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Commits on Nov 14, 2022

• update version

  Yenaled

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Commits on Mar 31, 2022

• Merge pull request #260 from mschilli87/drop-h5write-default-import

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  Yenaled

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Commits on Dec 10, 2021

• Drop hd5write.default import

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  mschilli87

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Commits on Jan 13, 2020

• Create SraRunTable.txt example for SRP012607

  lakigigar

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Commits on Dec 17, 2019

• Merge pull request #227 from sathomas/master

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  pimentel

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  4e221a1

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• Merge pull request #192 from warrenmcg/patch_g2g

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  pimentel

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Commits on Sep 29, 2019

• Update for Bioconductor version 3.9

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  sathomas

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Commits on Jun 28, 2018

• fix bug found by @lmigueel in #190; switch condition to just check for obj so that this function can be used with p-value aggregation mode

  warrenmcg

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• Merge pull request #191 from warrenmcg/patch_g2g

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  pimentel

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Commits on Jun 27, 2018

• fix outdated documentation for 'sleuth_to_matrix'

  warrenmcg

  committed
  50b35d0

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• add back in deleted 'gene_from_gene' method to fix #190

  warrenmcg

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Commits on Jun 7, 2018

• fix typo

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  warrenmcg

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Commits on Jun 6, 2018

• Merge pull request #179 from pachterlab/devel

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  pimentel

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• fix typo

  pimentel

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  bc0fddc

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• fix #180 summary bug

  pimentel

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Commits on Jun 5, 2018

• fix occurence of sample_to_condition. fix sleuth_to_matrix #174

  pimentel

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• update CHANGELOG for release v0.30.0 #talon

  pimentel

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Commits on Jun 3, 2018

• Merge pull request #168 from warrenmcg/new_weight

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  pimentel

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Commits on Apr 30, 2018

• changed incorrect column renaming convention, warning also not valid because there are duplicated gene names corresponding to multiple transcripts

  

  Lynn Yi

  authored and

  Lynn Yi

  committed
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• aggregation column name

  

  Lynn Yi

  authored and

  Lynn Yi

  committed
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• filtered out NA row for sleuth aggregation for when target_ids don't map

  

  Lynn Yi

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  Lynn Yi

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• Merge branch 'devel' of https://github.com/pachterlab/sleuth into devel

  

  Lynn Yi

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  Lynn Yi

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Commits on Apr 23, 2018

• force the 'target_mapping' to be a treated as a data.frame with character columns

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  warrenmcg

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• remove hard dependencies on dplyr and ggplot2

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  warrenmcg

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• add encoding info to description to prevent errors when updating documentation

  warrenmcg

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• avoid warning when checking if 'normalize = TRUE'

  warrenmcg

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Commits on Apr 18, 2018

• add 'details' section and 'pval_aggregate' results to documentation:

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  warrenmcg

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• create 'advanced options' section for the 'sleuth_fit' function:

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  warrenmcg

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• update NAMEPSACE

  warrenmcg

  committed
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• add sanity checks based on 'check_norm_status' for plots and 'sleuth_fit'

  warrenmcg

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• Make several improvements to documentation and sanity checks:

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  warrenmcg

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