Commits

Branch selector

 master

User selector

All users

Datepicker

All time

Commit History

Commits on Sep 11, 2023

• Incorrect arguments to printf in error message

  pd3

  committed
  87e775f

  Copy full SHA for 87e775f

Commits on Jul 20, 2023

• Add stats and mplot script

  pd3

  committed
  6166a88

  Copy full SHA for 6166a88

Commits on Oct 25, 2022

• Update annot-regs documentation

  pd3

  committed
  2c3adb8

  Copy full SHA for 2c3adb8

• Add new -x option and allow to run w/o -t,-a to just print matching lines

  pd3

  committed
  65f997c

  Copy full SHA for 65f997c

Commits on Oct 11, 2020

• More informative error messages

  pd3

  committed
  2c8b142

  Copy full SHA for 2c8b142

Commits on Jul 27, 2020

• New `annot-regs -a cnt` type. Also add "nbp","frac","cnt" to header if present

  pd3

  committed
  869470c

  Copy full SHA for 869470c

Commits on Jun 25, 2020

• Write to the output file, not stdout!

  pd3

  committed
  d2327c7

  Copy full SHA for d2327c7

Commits on Jun 24, 2020

• Use logarithmic distribution for binning to avoid running out of memory in simulations with large number of possible outcomes

  pd3

  committed
  ed78d6d

  Copy full SHA for ed78d6d

Commits on Jun 18, 2020

• Print the number of used and skipped calls

  pd3

  committed
  7606620

  Copy full SHA for 7606620

Commits on Apr 24, 2020

• Take into account that chromosome lenghts can be significantly different,

  Show description for f4d6778
  pd3

  committed
  f4d6778

  Copy full SHA for f4d6778

Commits on Apr 21, 2020

• Quick hack: increase number of tries when preventing a possible infinite loop

  pd3

  committed
  ed1aeba

  Copy full SHA for ed1aeba

• Add first version of a gene recurrence test

  pd3

  committed
  5b9872d

  Copy full SHA for 5b9872d

Commits on Apr 7, 2020

• Skip sequences that are not listed in the fai file and print a warning rather than throwing an error

  pd3

  committed
  b499df2

  Copy full SHA for b499df2

• If config.mk is present, read it to override default rules (improve me still)

  pd3

  committed
  480f62e

  Copy full SHA for 480f62e

Commits on Mar 12, 2020

• Provide a hint with the error message

  pd3

  committed
  9abe601

  Copy full SHA for 9abe601

Commits on Mar 11, 2020

• Make the -p option output all placements, including this forgotten branch

  pd3

  committed
  f6cb87e

  Copy full SHA for f6cb87e

Commits on Mar 9, 2020

• Add new -p, --print-placements option

  pd3

  committed
  b77d442

  Copy full SHA for b77d442

Commits on Mar 7, 2020

• Output distribution of simulation hits as well; Fix a silly bug and call srandom() instead of srand() for tests to pass on mac.

  pd3

  committed
  0a49421

  Copy full SHA for 0a49421

Commits on Jan 31, 2020

• Prevent gcc warning

  Show description for 6071098
  pd3

  committed
  6071098

  Copy full SHA for 6071098

Commits on Jan 3, 2020

• Migrate from hts_* to bgzf_* functions

  pd3

  committed
  69dfbd2

  Copy full SHA for 69dfbd2

• Use the correct version string from utils/libs

  pd3

  committed
  9a5b486

  Copy full SHA for 9a5b486

• Bug fix: calculate correctly tgt hits in the callset with the --no-bg-overlap option

  pd3

  committed
  288bfcd

  Copy full SHA for 288bfcd

Commits on Jan 2, 2020

• Clarify perm-test usage text example.

  pd3

  committed
  4fee09a

  Copy full SHA for 4fee09a

Commits on Dec 17, 2019

• New --no-bg-overlap option; Allow bed file with --calls option; Add tests; Improve documentation

  pd3

  committed
  4a873d4

  Copy full SHA for 4a873d4

Commits on Dec 16, 2019

• Add missing tests previously ignored by mistake because of .gitignore rules

  pd3

  committed
  de3eb60

  Copy full SHA for de3eb60

Commits on Nov 22, 2019

• New perm-test tool

  pd3

  committed
  837309b

  Copy full SHA for 837309b

Commits on Sep 27, 2019

• Fill dots in place of empty fields (\t\t) to prevent "write failed" errrors

  pd3

  committed
  24785a5

  Copy full SHA for 24785a5

Commits on Sep 23, 2019

• New --max-annots option

  pd3

  committed
  40d5b5a

  Copy full SHA for 40d5b5a

• Resolve merge conflicts

  pd3

  committed
  74cd638

  Copy full SHA for 74cd638

• New dist utility

  pd3

  committed
  f106445

  Copy full SHA for f106445

• Resolve merge conflict. Improve(?) make system, making it work on mac

  pd3

  committed
  d0eda53

  Copy full SHA for d0eda53

Commits on Sep 21, 2019

• Allow streaming of -s or -d from stdin

  pd3

  committed
  ca3236c

  Copy full SHA for ca3236c

Commits on Sep 16, 2019

• docs: Add missing markdown page

  pd3

  committed
  c9783fa

  Copy full SHA for c9783fa

Commits on Aug 15, 2019

• Add a new -H, --ignore-headers option

  pd3

  committed
  16128c1

  Copy full SHA for 16128c1

Commits on Aug 9, 2019

• Add forgotten test output

  pd3

  committed
  b126071

  Copy full SHA for b126071

Pagination

Previous

Next