When I run:
snakemake --use-conda -s cellect-ldsc.snakefile --configfile config.yml --conda-frontend conda
I get the following error:
SyntaxError in file /CELLECT/cellect-ldsc.snakefile, line 298:
Unexpected keyword temp in rule definition (cellect-ldsc.snakefile, line 298)
This is line 298 the error message is referring to:
temp("{BASE_OUTPUT_DIR}/precomputation/{run_prefix}/{run_prefix}.COMBINED_ANNOT.{chromosome}.l2.ldscore.gz"), # TEMP FILE
I am using:
snakemake -v
8.6.0
Has anyone else had this issue or know a way to resolve it? Thanks for your help.