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Need automated .cif to .pdb converter for structures #290

@pszgaspar

Description

@pszgaspar

Some structures only have a .cif format on rcsb.org but our automated scripts break on .cif files so a converter is needed that is called in the fetch_pdb_info function in construct/functions.py.

  • Find easy to setup third party cif to pdb converter
  • Write script in fetch_pdb_info function (construct/functions.py)
If no pdb file for structure, download cif instead
Convert cif to pdb and store it on the data repo under structure_data/pdbs/
Open that file with the parser in fetch_pdb_info
  • Add converter to puppet modules so it can setup easily for new users
  • Provide list of steps to setup for other devs

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