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v3.3.0 breaks #391

@mattdowle

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@mattdowle

covr is always so reliable and awesome! Today hit a very rare problem.
Seems to have started to fail on Travis for data.table with the recent update. Is it data.table-only or affecting more packages? Haven't debugged it yet. Thought I'd see if you were aware first.
I can reproduce it locally :

> library(covr)
> packageVersion("covr")
[1] ‘3.2.1> package_coverage()    # ok with v3.2.1
data.table Coverage: 98.47%
... snip ...
R/xts.R: 100.00%

> library(covr)
> packageVersion("covr")
[1] ‘3.3.0> package_coverage()  # not ok
files differ in number of lines:
31,33d30
<    a
< 1: 1
< 2: 4

files differ in number of lines:
36,42d35
< ```
< ##    x y  z
< ## 1: 1 4 10
< ## 2: 2 5 11
< ## 3: 3 6 12
< ```
< 

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