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Commits on Jul 23, 2022

• print all molecule changes, not just mrna

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• compartment check added, ticking up version

  

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• disabling max_cpu_time argument

  

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• updating default max cpu time in help text

  

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• added an output for maxcputime option that tells the user that NFsim quit because it reached max cpu time

  

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• remove output for tagged molecules

  

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• updated version to 1.2.1

  

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• making default CPU time infinite while allowing it to be set from command line

  

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• removed accidentally left debug statement

  

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Commits on Jan 13, 2022

• Merge pull request #32 from RuleWorld/rasilab-cleanup_output

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• Merge branch 'cleanup_output' of https://github.com/rasilab/nfsim into rasilab-cleanup_output

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• removing old CI files, we will work off of github actions instead

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Commits on Dec 17, 2021

• Add filename option to -rxnlog switch in help message

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• Remove reaction tagging for output and add new options to help

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Commits on Jul 6, 2021

• increasing validation iterations for consistency

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Commits on Jul 2, 2021

• updating validation, removing a compare block

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• adding test 21 for connectivity, ignoring .tsv files for the new tests

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Commits on Jul 1, 2021

• Nicer badge arrangement

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• Fixing GH actions badge

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• removing travis and appveyor badges

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• Merge pull request #30 from RuleWorld/connectivity

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• all validation checks pass, preparing for merge and moving GH actions to master

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• removing accidentally added line

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• more cleanup, removing submodule

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• removing more comments, cleaning up the commits

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• removing merge related comments

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• added test 20 for connectivity testing

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Commits on Jun 28, 2021

• many fixes to address performance issues introduced

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Commits on Jun 15, 2021

• a version that matches exactly to connectivity test models

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Commits on Jun 9, 2021

• adding GH actions build status badge

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• seaborn missing from PyPI version of pybionetgen still, temporarily adding here

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• adding back pip install to GH actions

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• GH actions need numpy

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• changing validation script to work with GH actions easily

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