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updated date
fscanf warning under Linux with BioC which I can't reproduce, by the way
bumped version to one over BioC-3.9 (will merge to BioC changes added here since)
use the correct R for as in CRAN testing
notes, very preliminary and probably ueseless, for fish plots
collated NEWS for BioC 3.5 release
2.5.12: citation
transitive reduction issues in nem