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Commits on Aug 12, 2025

• Update README.md

  robinjugas

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  2db148f

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Commits on Jan 8, 2025

• Merge pull request #10 from niinasmolander/patch-1

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  robinjugas

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  6df6a45

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• Update gcNormalization.R to suit multiple contigs

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  niinasmolander

  authored
  1f2d07e

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Commits on Apr 7, 2024

• BUG first modification - different number of contigs

  robinjugas

  committed
  1e5ae76

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Commits on Mar 14, 2024

• missing CHROM in empty CNV DF

  robinjugas

  committed
  cf1e703

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• Empty CNV_DF error

  robinjugas

  committed
  40c1937

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Commits on Jan 16, 2023

• cnvBoundaries tweak

  robinjugas

  committed
  b0c1675

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Commits on Jan 5, 2023

• Readme modified

  robinjugas

  committed
  dc02beb

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Commits on Jan 2, 2023

• First commit of v1.0

  robinjugas

  committed
  9e455a5

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Commits on Nov 20, 2022

• oricNormalization.R almost finished and working

  robinjugas

  committed
  f45e9fe

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• corrected GCnormalization giving Inf values

  robinjugas

  committed
  db14262

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Commits on Nov 9, 2022

• gcNormalization repaired

  

  robinjugas

  authored and

  robinjugas

  committed
  c7c0d07

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• README VCFfunction described

  

  robinjugas

  authored and

  robinjugas

  committed
  96193ef

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• removed NAs from CNV_DF

  

  robinjugas

  authored and

  robinjugas

  committed
  2b4b17d

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• removed NAs from CNV_DF

  

  robinjugas

  authored and

  robinjugas

  committed
  38e855e

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• Exceptions cases added for zero deletions and duplications

  

  robinjugas

  authored and

  robinjugas

  committed
  8adff45

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Commits on Oct 13, 2022

• bug in writeVCF causing duplicates

  robinjugas

  committed
  2d2e5b7

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• data.table unique instead of base which doesnt work4

  robinjugas

  committed
  d8badae

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• data.table unique instead of base which doesnt work3

  robinjugas

  committed
  933e6dc

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• data.table unique instead of base which doesnt work2

  robinjugas

  committed
  d5f741d

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• data.table unique instead of base which doesnt work

  robinjugas

  committed
  650bef7

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• edited unique into main function, error in writeVCF

  robinjugas

  committed
  9818b53

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• unique entries only

  robinjugas

  committed
  838e3f3

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Commits on Aug 16, 2022

• add # to header

  robinjugas

  committed
  ae3b279

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• added END= to VCF INFO

  robinjugas

  committed
  6675a4f

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• writeCNV missed POS column

  robinjugas

  committed
  f70c17a

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• writeVCF error corrected

  robinjugas

  committed
  7763aae

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• Separated function writeVCF, so the VCF is written on users demand.

  robinjugas

  committed
  5e80c23

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Commits on Aug 9, 2022

• Readme updated

  robinjugas

  committed
  bfaa4fb

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• Created vignettes

  robinjugas

  committed
  40cb8b9

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• Added multi-contig/chromosome support. Many files updated. Preparation for Bioconductor.

  robinjugas

  committed
  6242092

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Commits on Jun 23, 2022

• Bedgraph file argument parsing error

  robinjugas

  committed
  f6192d4

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Commits on Apr 25, 2022

• VCF file output, normalization

  robinjugas

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  3979010

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Commits on Oct 5, 2021

• devtools::document()

  robinjugas

  committed
  e006600

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• line 114 error: i replace by index 1

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