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Commits on Sep 15, 2025

• thinks to ignore for builds

  hyphaltip

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  95fb952

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• add script for install

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  68aada4

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Commits on Sep 10, 2025

• Merge pull request #45 from stajichlab/v0.6.0

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• add pyproject for pypi releases

  hyphaltip

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  747eea6

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Commits on Aug 25, 2025

• Merge pull request #43 from stajichlab/v0.6.0

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  3d4e0e8

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• add some more documentation

  hyphaltip

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  d1f3cb0

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• feature adjust end point also needs to be bound to 1

  hyphaltip

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  b47aeab

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• describe changes related to fix_table

  hyphaltip

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  c7c713a

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• support fixing NCBI table files when fcs trimming is simple start or end of contig trimming

  hyphaltip

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  b79c00c

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Commits on Aug 24, 2025

• set default release version of FCS screen

  hyphaltip

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Commits on Aug 22, 2025

• set default lowest memory at 1G, stop polish steps if no changes found in an iteration, and support samtools versions

  hyphaltip

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  57b6e2f

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• support samtools <1.0 and >1.0 separately

  hyphaltip

  committed
  20da7d9

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• logic to support old and new versions of samtools

  hyphaltip

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  a254d80

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Commits on Aug 21, 2025

• specify kmer value when building pipeline object for sourpurge

  hyphaltip

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  b2d196e

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Commits on Jul 29, 2025

• don't make unicycler the default

  hyphaltip

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  d513032

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• notes around v5 and v6

  hyphaltip

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  2f84eb9

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• add unicycler support

  hyphaltip

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  21e8e8e

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Commits on Jan 23, 2025

• fix numeric processing

  hyphaltip

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  4f9877f

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• env info and merge

  hyphaltip

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  3602936

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• force numeric for taxid argument since fcs requires it that way

  hyphaltip

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  af61fe2

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• polca notes

  hyphaltip

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Commits on Dec 19, 2024

• Add some more links to README.md

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• Merge pull request #31 from stajichlab/hyphaltip-patch-1

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• Add citation to README.md

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• add DOI to CITATION.cff

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  7e8d734

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Commits on Aug 10, 2023

• fix python version in environment.yml

  hyphaltip

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  ca3dd52

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• Merge branch 'main' of github.com:stajichlab/AAFTF

  hyphaltip

  committed
  0bb7e0a

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• fix for polca.sh from masurca that respects current samtools arguments and run

  hyphaltip

  committed
  3ab9b3e

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Commits on Aug 6, 2023

• Merge pull request #24 from stajichlab/hyphaltip-patch-1

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• Update environment.yml with pip depend

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Commits on Jul 26, 2023

• update sourmash databases for rs214 release of gtdb. Update formatting.

  hyphaltip

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  6b56e12

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• add some more description of updates to v0.5.0

  hyphaltip

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Commits on Jul 25, 2023

• support more descriptive msg

  hyphaltip

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  b3b1ab5

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• add aliases for sub-menu commands

  hyphaltip

  committed
  9223933

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• sourpurge menu: indicate list of choices for DB types and support sourmash -k size input

  hyphaltip

  committed
  56a5d2e

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