OHDSI
[Under development] Assessment of Pre-trained Observational Large Language-models in OHDSI (APOLLO)
Repository for OMOP CDM conventions as defined by THEMIS. These can be reference lists of concepts, pieces of standardized code for data generation or quality certification, and debates.
A tool to help improve data quality standards in observational data science.
WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interacti…
An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.
Definition and DDLs for the OMOP Common Data Model (CDM)
ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
Broadsea deploys the core OHDSI technology stack (Atlas & R Hades), using cross-platform Docker container technology.
An R package for connecting to databases using JDBC.
An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.
OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
An R package that facilitates access to a variety of OMOP CDM sample data sets.
OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies
Hestia is an API for function calling on the OMOP CDM.
A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list
A pipe friendly way to interact with an OMOP Common Data Model