Repository contaning data and codes to reproduce the comparison of sample-wise methods in the rRoma article.

• GMT file: h.all.v2023.1.Hs.symbols.gmt

• gene expression data: Rehman_CF_NCF_RNA_exp_matrix_norm.rda

• samples information : Rehman_CF_NCF_sample_labels.rda

• rROMA script: rROMA vignette (https://sysbio-curie.github.io/rROMA/index.html)

• comparison with the other state of the art methods: Rehman_CF_NCF_other_methods.R

• gene expression data: Rehman_IL17_TNFa_RNA_exp_matrix_norm.rda

• samples information : Rehman_IL17_TNFa_sample_labels.rda

• exploratory analysis and normalisation of data matrix: Rehman_IL17_TNFa_RNA_exp_matrix_norm.R

• rROMA script: Rehman_TNF_IL17_rROMA.R

• comparison with the other state of the art methods: Rehman_TNF_IL17_other_methods.R