Thanks to visit codestin.com
Credit goes to github.com

Skip to content

about the resource of liana+cell2cell and further L-R pairs determination of among cell cell communication #14

@xflicsu

Description

@xflicsu

Dear ccc_protocols developer,
Thanks for the combination of the two powerful ccc detection methods.
I have two question:

  1. When I read the cell2cell paper, they collect the L-R pairs from LewisLabUCSD/Ligand-Receptor-Pairs(https://raw.githubusercontent.com/LewisLabUCSD/Ligand-Receptor-Pairs/master/Human/Human-2020-Jin-LR-pairs.csv). And the legend of tensor_factors_plot contains three type of L-R pairs (Secreted Signaling, ECM-Receptor and Cell-Cell Contact).
    So, could you also integrate the L-R pairs information in liana+?

  2. After the context-dependent communication pattern detection, we also want to get the information of one L-R pair and their corresponding cell-cell pair.
    So, how can we get those information?
    And any suggestion for visualization of one cell communication form mutiple conditions?

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions