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Commits on Mar 21, 2024

• Decoupler module (#5317)

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  3 peopleauthored
  c455770

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• fix optional cram support in modules and migrate to nf-test (#5329)

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  tomiles

  and

  CMGG Cloud Team

  authored
  1943aa6

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• port `manta-tumoronly` to nf-test (#5363)

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  famosab

  authored
  8731a62

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• Dp24 pretextmap update (#5245)

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  DLBPointon

  authored
  9269b7b

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• new module: Pymygene (#5271)

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  suzannejin

  authored
  1d2f7e4

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• Added module isoseq3/tag (#5324)

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  skraettli

  and

  mauro-saporita

  authored
  293accf

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• add popscle/dscpileup module (#5336)

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  wxicu

  and

  Xichen Wu

  authored
  4df6c65

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• 5234 Migrate deepvariant pytest to NF test (#5269)

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  lukbut

  and

  maxulysse

  authored
  199ba08

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Commits on Mar 20, 2024

• 842 new module circularmappercirculargenerator (#5326)

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  apalleja

  and

  itrujnara

  authored
  53927ff

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• Fix ashlar tag string and version string output (#5353)

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  jmuhlich

  authored
  a5a287d

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• ported idmerger pytest to nf-test #5157 (#5252)

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  HomoPolyethylen

  authored
  b5e1485

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• Final adjustments to all celesta related files (#5331)

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  LukasHats

  and

  kbestak

  authored
  309efa1

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• Initial commit for bamclipper (#5254)

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  Krannich479

  authored
  4d3646d

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• update cnvkit/batch and ported to nf-test (#5259)

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  lescai

  and

  adamrtalbot

  authored
  f53b071

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• Added openms/peptideindexer (#5327)

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  PaolaD

  authored
  66f90c2

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• port `bcftools-stats` to nf-test (#5270)

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  famosab

  and

  maxulysse

  authored
  618364f

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• Add config to `strelka/somatic` (#5346)

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  famosab

  authored
  a626d7c

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• Leviosam2 (#5340)

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  3 peopleauthored
  e586bc1

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• port `strelka/germline` to nf-test (#5341)

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  famosab

  and

  maxulysse

  authored
  e8f2c77

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• Plink modules gwas association analysis (#5335)

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  LorenzoS96

  and

  lescai

  authored
  9e1ae21

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• Updated test_data.config to include https://github.com/nf-core/test-d… (#5345)

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  CarsonJM

  authored
  63117f0

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• nf-test: Migrate islandpath tests to nf-test (#5321)

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  jvfe

  authored
  f5fa73d

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• metamaps/mapDirectly (#5162)

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  sofstam

  and

  CarsonJM

  authored
  408251a

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• add nf-test for gatk4/combinegvcfs - #3936 (#5337)

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  vlebars

  and

  LE BARS Victor

  authored
  fe3d7aa

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• Update test_data.config (#5339)

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  Krannich479

  authored
  2c3f015

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• Adding module to perform linkage disequilibrium analysis using Plink (#5315)

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  DavideBag

  and

  lescai

  authored
  970e109

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• port `strelka-somatic` to nf-test (#5325)

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  famosab

  authored
  437d16b

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• port `manta-somatic` to nf-test (#5313)

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  famosab

  and

  maxulysse

  authored
  ab693fb

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• Add president module (#5256)

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  paulwolk

  and

  sateeshperi

  authored
  15e2db9

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• Add module nanofilt (#5290)

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  lfreitasl

  authored
  fc63cd1

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• Tcoffee tcs (#5288)

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  alessiovignoli

  authored
  2d5ea49

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• Add and update - picard/gatk4 - addorreplacereadgroups (#5302)

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  3 peopleauthored
  c331b11

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• New module svtypersso (#5311)

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  tstoeriko

  authored
  4685ac9

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• scimap/spatiallda (#5260)

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  migueLib

  authored
  bf021bf

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• add cram/index support to dragmap (#5303)

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  matthdsm

  authored
  dd2757c

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