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Commits on Apr 27, 2021

• Update README.md

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Commits on Apr 6, 2021

• Updated FAQ

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Commits on Dec 7, 2020

• Added conda installation

  schmeing

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Commits on Dec 1, 2020

• Call it version 1.1

  

  Stephan Schmeing

  committed
  3279e76

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Commits on Nov 21, 2020

• Fixed wrong counts for sequence_content_reference_

  

  Stephan Schmeing

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  968effe

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• Fixed bug of bwa fragment length cut

  

  Stephan Schmeing

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  0ff845c

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Commits on Nov 18, 2020

• Improved plotting

  

  Stephan Schmeing

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Commits on Nov 11, 2020

• Improved coverage detection

  

  Stephan Schmeing

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  1f17759

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Commits on Nov 3, 2020

• --refBias file not needed anymore

  

  Stephan Schmeing

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Commits on Oct 28, 2020

• Fixed bug from python2 to python3 conversion

  

  Stephan Schmeing

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Commits on Oct 23, 2020

• Fixed using read position instead of read position on reference

  

  Stephan Schmeing

  committed
  d83da39

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Commits on Oct 21, 2020

• Update README.md

  schmeing

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  e325121

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• Added noInDelErrors and noSubstitutionErrors parameter

  

  Stephan Schmeing

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  c50d93d

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Commits on Oct 15, 2020

• Created pools for large vectors instead of having one per thread

  

  Stephan Schmeing

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  3bf7d4c

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• Fixed x11 issue for plotting

  

  Stephan Schmeing

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  54ba750

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• Lowered default minimum mapping quality

  

  Stephan Schmeing

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  6f98953

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Commits on Oct 7, 2020

• Fixed breaking fastq if no space is present in id

  

  Stephan Schmeing

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  043d0b3

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• Fixed undefined reference appearing in some cases

  

  Stephan Schmeing

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  317b909

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Commits on Oct 6, 2020

• Updated python requirements

  schmeing

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  7d76b80

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• Added missing conda folder

  

  Stephan Schmeing

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  ab40dbe

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• Prepared conda package

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  Stephan Schmeing

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Commits on Oct 1, 2020

• Moved from python2 to python3

  

  Stephan Schmeing

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  e19831f

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• Fixed bug that could lead to wrong adapter length

  

  Stephan Schmeing

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  ff9b8d2

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Commits on Aug 29, 2020

• Added FAQ

  schmeing

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  423e0a0

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• Deactivated googletest installation

  

  Stephan Schmeing

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  6d22f95

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• Apply verbosity level to direct output with cerr

  

  Stephan Schmeing

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  ae5aa16

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• Major speedup for simulation with variants

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  Stephan Schmeing

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Commits on Aug 22, 2020

• Guaranteed that spliting one allele into multiple indentical will result in same coverage distribution

  

  Stephan Schmeing

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  481cbb0

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Commits on Aug 21, 2020

• Increased allowed number of alleles from 64 to 128

  

  Stephan Schmeing

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• Added missing signal to prevent simulation after failed statistics calculation

  

  Stephan Schmeing

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Commits on Jul 29, 2020

• Made README and program output consistent

  

  Stephan Schmeing

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  bc04f27

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• Updated README

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  schmeing

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  d2d8d8d

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• Added direct interface to only apply error and quality model

  

  Stephan Schmeing

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  c131b64

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Commits on Jul 23, 2020

• Improved writing to disk for simulated reads

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  Stephan Schmeing

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  7e2a656

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• Closing file after sys error writing now

  

  Stephan Schmeing

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