Merge pull request #25 from seanthimons:integration

docs: Update NEWS.md for release

docs: update NEWS.md format and build process

Merge pull request #10 from seanthimons/seanthimons-patch-2

Update release_package.yml

ComptoxR 1.2.2.9007

# ComptoxR 1.2.2.9007

- Enhanced the run_debug() and set_verbose() functions to display informative alerts when debug or verbose modes are toggled, providing clearer feedback to users.
- Introduces util_classyfire.R for ClassyFire API classification of SMILES strings.
- Refactors ct_synonym() for improved error handling, debugging, and response parsing.
- Updates chemi_classyfire() to use environment variable for verbosity.
- Adds support for natural products server in zzz.R.
- Updates ct_classify() to better handle mixtures and unknowns.
- Minor improvements and code cleanup in chemi_cluster.R.
- Adds 'webchem' to DESCRIPTION suggests.
- chemi_classyfire now returns proper order for taxonomy.
- Added extract_mol_formula function to assist in curation
- Updated NAMESPACE, build schedule, and Helpers for intial loading.
- Updated ct_search to handle suggestions.

ComptoxR 1.2.2.9005

# ComptoxR 1.2.2.9005

- Added ct_functional_use; pulls reported and predicted usage from CCD dashboard.
- Added utility function for CASRN strings
- Added function to extract out molecular formulas

ComptoxR 1.2.2.9004

# ComptoxR 1.2.2.9004

- Updated ct_list to be default extract out DTXSIDs
- Added ct_related to find related substances. Subject to depreciation.
- Minor update to data files and ct_details.
- Added chemi_classyfire function for classification
- Added hclust_method parameter for chemi_cluster
- Added informative error messages to all *_server functions to indicate valid server options.
- Added chemi_safety_sections; retrieves PubChem datasheets.
- Added epi_suite functions to pull and search data
- Added new logic for servers and API endpoints
- Updated ct_search to remove mass + formula searching, rewrote backend with new helper function.
- Updated docuemenation for ct_search
- Adjustment to searching functions
- Updated two functions to remove rjson dependency.
- Minor update to data files and ct_details.
- Added chemi_classyfire function for classification
- Added hclust_method parameter for chemi_cluster
- Added informative error messages to all *_server functions to indicate valid server options.
- Added chemi_safety_sections; retrieves PubChem datasheets.
- Added epi_suite functions to pull and search data
- Added new logic for servers and API endpoints
- Updated ct_search to remove mass + formula searching, rewrote backend with new helper function.
- Updated docuemenation for ct_search
- Adjustment to searching functions
- Updated two functions to remove rjson dependency.

Update main.yml

ComptoxR 1.2.2.9003

# ComptoxR 1.2.2.9003

- Updated ct_search to return suggestions
- Fixed chemi_search
- Clean up of ct_descriptors
- Added chemi_predict for TEST and OPERA results. Currently just a table, without organization.
- Updated setup and ping requests for timeout.


- Same as previous version.

ComptoxR 1.2.2.9002

# ComptoxR 1.2.2.9002

- Same as previous version.

ComptoxR 1.2.2.9001

# ComptoxR 1.2.2.9001

- Same as previous version.