Commits

Branch selector

 master

User selector

All users

Datepicker

All time

Commit History

Commits on Dec 10, 2024

• add stub test for samtools/mpileup (#7192)

  Show description for 13e7d10
  FriederikeHanssen

  authored
  13e7d10

  Copy full SHA for 13e7d10

• Update: deseq2/differential for upcoming improved standardisation of template modules (#7178)

  Show description for d752b3e
  

  jfy133

  and

  famosab

  authored
  d752b3e

  Copy full SHA for d752b3e

• Add foldmason createdb (#7180)

  Show description for 0270c0f
  

  luisas

  and

  JoseEspinosa

  authored
  0270c0f

  Copy full SHA for 0270c0f

• Update GitHub Actions (#7126)

  Show description for 8aef0e0
  renovate[bot]

  authored
  8aef0e0

  Copy full SHA for 8aef0e0

• port parabricks/genotypegvcf to nf-test (#6980)

  Show description for 51145aa
  

  3 peopleauthored
  51145aa

  Copy full SHA for 51145aa

Commits on Dec 9, 2024

• add TCOFFEE/EXTRACTFROMPDB (#7167)

  Show description for 1f94c91
  

  luisas

  and

  JoseEspinosa

  authored
  1f94c91

  Copy full SHA for 1f94c91

Commits on Dec 6, 2024

• Add pigz to trimgalore (#7169)

  Show description for 4c2d06a
  

  edmundmiller

  and

  SPPearce

  authored
  4c2d06a

  Copy full SHA for 4c2d06a

• mmseqs version bump - cluster (+tests ported to nf-test), createdb, createtsv, databases, linclust (#7170)

  Show description for a437c79
  vagkaratzas

  authored
  a437c79

  Copy full SHA for a437c79

• Replace switch with else-if in utils_nfcore_pipeline (#7168)

  Show description for 51ae540
  robsyme

  authored
  51ae540

  Copy full SHA for 51ae540

Commits on Dec 5, 2024

• Add args2 to samtools view inside pretextmap (#7162)

  Show description for c33544d
  

  mahesh-panchal

  and

  MartinPippel

  authored
  c33544d

  Copy full SHA for c33544d

• fix read variable in for loop (#6921)

  MartinPippel

  authored
  42140b7

  Copy full SHA for 42140b7

• Pyrodigal - add --jobs flag for multi-threaded operation, bump version (#7116)

  Show description for 938e803
  

  prototaxites

  and

  jasmezz

  authored
  938e803

  Copy full SHA for 938e803

Commits on Dec 4, 2024

• Add input gt foldmason (#7155)

  Show description for 8541ec4
  luisas

  authored
  8541ec4

  Copy full SHA for 8541ec4

• `SHAPEIT5_PHASERARE` Migrate to nf-test (#7151)

  Show description for 58e95bf
  

  LouisLeNezet

  and

  LouisLeNezet

  authored
  58e95bf

  Copy full SHA for 58e95bf

• `SHAPEIT5_SWITCH` Migrate to nf-test (#7066)

  Show description for 175e642
  

  LouisLeNezet

  and

  LouisLeNezet

  authored
  175e642

  Copy full SHA for 175e642

• add new module vt/decompose_blocksub (#7139)

  Show description for 30e4a82
  

  kubranarci

  and

  LouisLeNezet

  authored
  30e4a82

  Copy full SHA for 30e4a82

• `SHAPEIT5_LIGATE` Migration to nf-test (#7060)

  Show description for 8dccae4
  

  3 peopleauthored
  8dccae4

  Copy full SHA for 8dccae4

• Change GLIMPSE2_concordance non mandatory values (#7146)

  Show description for 6aed502
  

  LouisLeNezet

  and

  sateeshperi

  authored
  6aed502

  Copy full SHA for 6aed502

Commits on Dec 3, 2024

• Cellbender empty droplet removal (#7031)

  Show description for 23600f6
  chaochaowong

  authored
  23600f6

  Copy full SHA for 23600f6

• New module: COPTR/ESTIMATE (#7149)

  Show description for 47e81f6
  

  ramirobarrantes

  and

  itrujnara

  authored
  47e81f6

  Copy full SHA for 47e81f6

• Increase default resource allocation for Ribotracer prepareorfs (#7145)

  FelixKrueger

  authored
  2cc745f

  Copy full SHA for 2cc745f

• Convert exception obj to string (#7148)

  nschcolnicov

  authored
  d588e57

  Copy full SHA for d588e57

• `SHAPEIT5_PHASECOMMON` Migrate to nf-test (#7061)

  Show description for 86dd7be
  

  3 peopleauthored
  86dd7be

  Copy full SHA for 86dd7be

• Minor refactor on attachMultiqcReport function. (#7129)

  Show description for 8540068
  

  robsyme

  and

  mirpedrol

  authored
  8540068

  Copy full SHA for 8540068

• Minor fixes to linting in prepro (#7144)

  Show description for 2c0260e
  pinin4fjords

  authored
  2c0260e

  Copy full SHA for 2c0260e

• New module: COPTR/EXTRACT (#7089)

  Show description for f25bd4b
  

  3 peopleauthored
  f25bd4b

  Copy full SHA for f25bd4b

• Add clustalo as aligner to fasta_newick_epang_gappa swf (#7099)

  Show description for 725f406
  

  erikrikarddaniel

  and

  SPPearce

  authored
  725f406

  Copy full SHA for 725f406

Commits on Dec 2, 2024

• Add module `muse/sump` (#5629)

  Show description for 8e17f28
  

  famosab

  and

  SPPearce

  authored
  8e17f28

  Copy full SHA for 8e17f28

• Switch featureCounts to TSV (#7136)

  Show description for 9508616
  edmundmiller

  authored
  9508616

  Copy full SHA for 9508616

• Fix bug in `RRNATRANSCRIPTS` with harcoded gtf (#7141)

  Show description for 812edf8
  atrigila

  authored
  812edf8

  Copy full SHA for 812edf8

• Lint fastqs before and during preprocessing (#7123)

  Show description for 34774b3
  

  pinin4fjords

  and

  maxulysse

  authored
  34774b3

  Copy full SHA for 34774b3

• new module plink genome (#7112)

  Show description for bcb2919
  

  RuthEberhardt

  and

  sateeshperi

  authored
  bcb2919

  Copy full SHA for bcb2919

Commits on Dec 1, 2024

• checkm/qa: Improve input validation (#7119)

  Show description for 867961a
  

  dialvarezs

  and

  sateeshperi

  authored
  867961a

  Copy full SHA for 867961a

Commits on Nov 30, 2024

• use just MemoryUnit as per language server reco (#7127)

  sateeshperi

  authored
  9a1e8bb

  Copy full SHA for 9a1e8bb

• Fastq align dedup bwameth (#7007)

  Show description for bd5f75c
  

  3 peopleauthored
  bd5f75c

  Copy full SHA for bd5f75c

Pagination

Previous

Next