IndexError when running minimds_inter.py script #21
Description
The software you developed is fantastic, but I had trouble building 3D models between chromosomes.
856 Reading ../../data/fat/fat_36_Z_1.0mb.bed
857 Reading ../../data/fat/fat_37_Z_1.0mb.bed
858 Reading ../../data/fat/fat_38_Z_1.0mb.bed
859 Reading ../../data/fat/fat_39_Z_1.0mb.bed
860 Reading ../../data/fat/fat_Z_100kb.bed
861 Scanning ../../data/fat/fat_1_100kb.bed
862 Traceback (most recent call last):
863 File "/home/SLY68/biosoft/miniMDS/minimds_inter.py", line 168, in <module>
864 main()
865 File "/home/SLY68/biosoft/miniMDS/minimds_inter.py", line 158, in main
866 structures = interMDS(chrom_names, args.prefix, args.inter_res, args.intra_res, args.partitioned, params)
867 File "/home/SLY68/biosoft/miniMDS/minimds_inter.py", line 111, in interMDS
868 r, t = la.getTransformation(inferred_low, true_low)
869 File "/home/SLY68/biosoft/miniMDS/linear_algebra.py", line 13, in getTransformation
870 a.append(structure1.points[num-structure1.offset].pos)
871 IndexError: only integers, slices (`:`), ellipsis (`...`), numpy.newaxis (`None`) and integer or boolean arrays are valid indices
872 Scanning ../../data/lean/lean_1_100kb.bed
873 Scanning ../../data/lean/lean_2_100kb.bed
874 Scanning ../../data/lean/lean_3_100kb.bed
875 Scanning ../../data/lean/lean_4_100kb.bed
876 Scanning ../../data/lean/lean_5_100kb.bedHere is my running script:
python ~/biosoft/miniMDS/minimds_inter.py -n 50 ../../data/fat/fat 1000000 100000
python ~/biosoft/miniMDS/minimds_inter.py -n 50 ../../data/lean/lean 1000000 100000