Highlights
- Pro
-
-
streamlit_app_test Public
A small repo to test out streamlit, a new tool for serving awesome web-based python apps.
Python UpdatedAug 12, 2024 -
jetson_nanopore_sequencing Public
A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.
-
Miles_CV Public
An online repository to provide an updated personal and professional CV.
CSS UpdatedMar 20, 2024 -
bedmeth2bedgraph Public
Small tool to convert bedmethyl format to custom bedgraph output
Rust MIT License UpdatedMar 18, 2024 -
mitofish Public
This script generates "baited" sequences from across a provided reference to search for them in fastq file(s)
-
MTG-Markdown-Generator Public
A Python script to generate markdown tables for Magic: The Gathering cards using the Scryfall API.
-
MTGCardFinder Public
MTG Card Markdown Toolkit - a VSCode extension to grab card image and information for markdown documents.
-
illumina450k_filtering Public
A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays
-
spotify-github-profile Public
Forked from kittinan/spotify-github-profileShow your Spotify playing on your Github profile
Python MIT License UpdatedOct 31, 2022 -
guppy_parameter_optimiser Public
A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate
-
-
random_plotting_scripts Public
A dump of some random and testing plotting scripts from various languages
UpdatedMar 8, 2022 -
-
-
GPU-musings Public
A collection of my thoughts around GPUs for genomic analysis and sequencing
-
NvidiaGTC_2021 Public
My 40min presentation for Nvidia Spring GTC 2021 on portable sequencing tech and Nvidia GPUs
-
eResearch-Presentation-2021 Public
My eResearch 2021 presentation on portable sequencing technology and it's role in community driven science.
JavaScript UpdatedMar 18, 2021 -
My plenary presentation for the CLNR 401 weekend seminar
JavaScript UpdatedMar 6, 2021 -
CMDHB-Visit-Jan2021 Public
Short presention on portable sequencing for CMDHB visit to ESR
JavaScript UpdatedJan 26, 2021 -
AlkResBaz_KeyStory_2020 Public
My Key Story presentation for Auckland Research Bazaar 2020
JavaScript UpdatedDec 10, 2020 -
Our presentation on 'real-time' genomics for ESR Data Science Week 2020.
-
smrnaseq Public
Forked from nf-core/smrnaseqA small-RNA sequencing analysis pipeline
-
A small repo to hold useful resources for various courses I teach
3 UpdatedOct 14, 2020 -
This repository contains data, results and supplementary information to go alongside our manuscript detailing the validation of immune cell specific methylation markers.
-
tSNE_plotting Public
some documentation for exploring the plotting of tSNE results from various data sources
-
covid_analysis Public
Exploration of new Zealand COVID19 data from the MoH
-
bootNet Public
bootNet is a wrapper for the fantastic glmnet function - it brings bootstrapping and parallel processing to the elastic-net framework.
-
singularity-genmod Public
A quick singularity recipe for genmod to facilitate use in variant annotation pipelines
2 UpdatedMar 12, 2020 -
presentation_karaoke Public
Forked from eleybourn/presentation_karaoke1 minute, random topic, random slides --- GO!
JavaScript Other UpdatedMar 3, 2020