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Commits on Oct 19, 2025

• Add cherry-pick summary documentation

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• Fix docker-compose.yml syntax errors

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Commits on Oct 18, 2025

• Add comprehensive Docker deployment documentation

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• Add Chainguard Docker containerization for entire stack

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• Fix E2E test failures: Add error handling and cache fallback

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• Fix agent orchestration: Add HumanMessage to initial state

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• Add .DS_Store and archive files to gitignore

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• Fix Writer KG TSV parsing and AWS credentials

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Commits on Oct 17, 2025

• Complete Lobster architecture migration - all agents now ReAct-based

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• Document critical architecture fragmentation issues

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• Add demo flow documentation and INDRA request examples

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• Add comprehensive live integration tests for Writer KG and E2E pipeline

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• Fix import errors and update test for ReAct architecture

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• Migrate to Lobster architecture with langgraph_supervisor

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• Clean up old cruft, keep essential fixture files

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• Add MeSH pipeline summary documentation

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• Fix MeSH label extraction and test Writer KG integration

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• Merge telegram branch: Integrate healthOS Telegram bot with INDRA agent

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• adding agent

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• Add MeSH→Writer KG pipeline with parallel processing

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• adding bot

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• mergie

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• migration of agent into bot

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• Update aeon-gateway submodule to latest with Chainguard Docker support

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• Add Chainguard Docker containerization for entire stack

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• Add MeSH→Writer Knowledge Graph pipeline

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• Add Writer API key configuration for MeSH Knowledge Graph

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• Fix INDRA API node resolution parameter names

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• Add comprehensive test suite for INDRA API integration

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• Fix INDRA API integration with OpenAPI schema

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• Remove duplicate and cruft documentation files

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Commits on Oct 14, 2025

• xMerge branch 'main' of https://github.com/the-omics-os/digitalme

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• with ui

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• Update aeon-gateway submodule to latest version

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• Update aeon-gateway submodule to latest version

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