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Commits on Nov 21, 2021

• Peddy nf core2 2dev0 (#1048)

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  3 peopleauthored
  45985ff

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• CNVkit: Make targets file optional when running in WGS mode (#1030)

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  5 peopleauthored
  1455498

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• Add phyloflash module (#786)

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  4 peopleauthored
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• Update: `uLTRA` (#1081)

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  4 peopleauthored
  c25c3fe

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• update: `gunzip` to include meta input tuple (#1082)

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  5 peopleauthored
  d30bf23

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• add bakta module (#1085)

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  rpetit3

  and

  drpatelh

  authored
  29c6697

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• add ectyper module (#948)

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  3 peopleauthored
  5ebe626

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Commits on Nov 19, 2021

• Add new module: Das Tool (#1004)

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  4 peopleauthored
  72c94db

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Commits on Nov 18, 2021

• Add thread option to samtools modules (#1069)

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  FriederikeHanssen

  and

  phue

  authored
  19035c9

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• Fix picard markduplicates (#1084)

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  3 peopleauthored
  4e5b6ed

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• Update in GATK4 variantfiltration: Added vcf_index to vcf tuple; output to vcf.gz format. (#1083)

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  praveenraj2018

  and

  rpetit3

  authored
  43a1c1c

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• use underscores in anchors and references (#1080)

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  rpetit3

  authored
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Commits on Nov 17, 2021

• Add gatk somatic paired calling subworkflow (#1067)

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  3 peopleauthored
  5b975cc

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• Add gatk somatic tumour calling subworkflow (#1064)

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  3 peopleauthored
  071b1d5

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Commits on Nov 16, 2021

• feat: Add main.nf (#1077)

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  edmundmiller

  authored
  2d45491

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• GATK4 SplitNCigarReads: fasta_fai_dict tuple is now split into separate input channels (#1076)

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  praveenraj2018

  and

  maxulysse

  authored
  691feea

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• Update dsh-bio to 2.0.6. (#1075)

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  heuermh

  and

  drpatelh

  authored
  b50f4e3

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• [fix] hicap module allow optional outputs (#937)

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  4 peopleauthored
  bc8899f

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Commits on Nov 15, 2021

• add new nucmer module (#945)

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  4 peopleauthored
  d5f6985

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• Cooler cload (#634)

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  4 peopleauthored
  52c541b

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• add clonalframeml module (#974)

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  rpetit3

  and

  chris-cheshire

  authored
  c2bba7a

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• Add module get_chrom_sizes (#1063)

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  6 peopleauthored
  13b8a16

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• add ncbi-genome-download module (#980)

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  3 peopleauthored
  2294ff7

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• Added new module csvtk/split (#1014)

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  SusiJo

  and

  drpatelh

  authored
  ad46010

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• Fix subworkflows seperate from modules (#933)

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  4 peopleauthored
  2af071e

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• Add Miniasm module (#962)

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  4 peopleauthored
  527ccdb

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• add Kronatools KTImportTaxonomy (#928)

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  4 peopleauthored
  466b964

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• Add Medaka module (#992)

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  3 peopleauthored
  8d9e8ae

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• Macs2 calllpeak (#1038)

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  jianhong

  and

  JoseEspinosa

  authored
  4398056

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• feat: fastaidx -> fai (#1073)

  maxulysse

  authored
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• feat: _idx -> _tbi (#1074)

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  maxulysse

  and

  FriederikeHanssen

  authored
  5b1ce48

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• Add `bamutil/trimbam` (#1060)

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  3 peopleauthored
  632587a

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• new module fargene (#1068)

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  louperelo

  and

  drpatelh

  authored
  eff5158

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• Cooler zoomify (#514)

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  5 peopleauthored
  7ad42ea

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• add Krona_db module (#995)

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  5 peopleauthored
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