When invoking the explicit try clone command via the CLI wrapper - it always calls the script as cd, so try clone <uri> [name] arrives as cd clone <uri> [name].

This caused if is_git_uri?(search_term.split.first) to always return false and resulted in the repo failing to clone and the folder names getting messed up.

The fix checks args.first == "clone" in cmd_cd! and if true it routes to cmd_clone! .

Also included a flaky test fix in this PR and I added { type: 'touch'} within the cmd_clone! method to ensure scoring logic works accurately.