A CNN based algorithm with 91% accuracy for brain tumor detection.

Code for analyzing medical images saved as .dicom files

⚕️ An educational tool to visualise k-space and aid the understanding of MRI image generation

Forked to 'github.com/uwmri/QVT'

A Matlab toolbox for examining the quality of structural (SNR) and functional (tSNR, SFNR) MRI

input ct data use U-net method systh mri

Deep-learning (U-NET) CNN model for fully automatic glioma segmentation in 3D volume of MRI data, Survival prediction using different algorithms

BreastDCEDL is a deep learning–ready DCE-MRI dataset of 2,070 breast cancer patients, sourced from I-SPY1, I-SPY2 and the DUKE cohort.

"Octopus Realtime Encephalography Lab" is the (hard) real-time networked EEG-lab framework I have developed during my PhD Thesis at Brain Research Lab of Hacettepe University Faculty of Medicine Biophysics Lab. It is meant to be a holistic golden-standard solution for all tasks of cortical source localization/networking, brain-computer interface…

Flexible bidsificator for multimodal datasets

Code to run and analyze fMRI study of somatosensory detection task

Fully supervised, healthy/malignant prostate detection in multi-parametric MRI (T2W, DWI, ADC), using a modified 2D RetinaNet model for medical object detection, built upon a shallow SEResNet backbone.

Basic reconstruction scripts for data uploaded to mridata.org

Guide to perform cerebral blood flow (CBF) processing on an arterial spin labelling (ASL) image with ANTs and FSL. The required codes are provided and explained.

We developed a guide for researchers in the Netherlands who want to share brain MRI data to help them get started.

Calculating theoretical MRI images with both TI (T1-weighting) and TE (T2-weighting) of choice, from separate T1-weighted and T2-weighted sets of images. (Python 3)

k-space weighting and masking for denoising of MRI image without blurring or losing contrast, as well as for brightening of the objects in the image with simultaneous noise reduction (on the example of Agilent FID data). (Python 3)

Simulating T1- and T2-weighted MRI images with arbitrary values of TI or TE, respectively. (Python 3)