R package to work with qPCR quantification of (bulk) aneuploidies.
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Apr 15, 2025 - R
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qpcr-analysis
Here are 22 public repositories matching this topic...
R Package to analyze and plot RT-qPCR data from QuantStudio software.
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May 27, 2025 - R
qPCR-calculate with UI created by streamlit and hosted on streamlit cloud service.
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Dec 11, 2023 - Python
R package for the analysis and visualization of RT-qPCR data.
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May 15, 2021 - R
Python script for qPCR analytic validation using Cq values of standard dilutions and technical replicates.
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Sep 29, 2025 - Python
Repo for testing qPCR assays by downloading genomes and in-silico PCR.
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Sep 18, 2025 - Python
An R-package for daily tasks required to handle biological data as well as avoid re-coding of small functions for quick but necessary data management.
rna-seq r statistics genomics ngs data-visualization data-visualisation chip-seq atac-seq bedtools daily-tasks datamining qpcr deeptools qpcr-analysis cutandtag
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Sep 3, 2025 - R
qPCR Plate Planner is a browser based tool to streamline the design, execution, and analysis of qPCR experiments. It is particularly suited for chromatin profiling workflows such as CUT&RUN, CUT&Tag, and ChIP-qPCR, where comparative epigenetic mark enrichment is quantified using the ΔΔCt method
epigenetics workflow-automation experimental-design qpcr-analysis gene-quantification master-mix plate-layout-design cut-and-run workflow-automation-tools fold-change-analysis chip-qpcr 384-well ddct-analysis chromatin-enrichment
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Oct 27, 2025 - HTML
Process qPCR data to evaluate the consistency and reliability of Ct values across technical triplicates.
matlab data-visualization open-science statistical-analysis data-analysis reproducibility qpcr qpcr-analysis
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Jul 6, 2025 - MATLAB
Calculation of SARS viral particles present in qPCR'd wastewater sample
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Dec 29, 2021 - C++
Created primarily to process qPCR Cq data for graphical output. However, the functions included is generic and good for other use. This package includes functions to calculate the fold change using either ddCt method or Paffl method, and function to calculate SEM and check outliers in a given dataset.
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Oct 23, 2022 - R
R Package accomodating research for DMAS-qPCR study
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Feb 15, 2024 - R
InterOpt: Improved gene expression quantification in qPCR experiments using weighted aggregation of reference genes
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Oct 19, 2023 - R
Qupid (Quantitative PCR Interface to Delta-Delta-Ct) - a versatile web-application for swift Delta-Delta-Ct analysis of qPCR data
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Feb 13, 2023 - Python
Biomarker data set by Vermeulen et al. (2009)
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Apr 22, 2024 - R
An easy way to normalize CT values to Internal controls as well as housekeeping genes and download as heatmap.
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Jan 16, 2023 - R
Pipeline dedicated to finding the most stable genes among a single or multiple expression dataset(s). It is useful in particular for finding the most suitable RT-qPCR reference genes for a specific species.
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Oct 16, 2025 - Nextflow
A gentle introduction to data analysis in R
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Aug 8, 2023 - Dockerfile
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