spades

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Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads

workflow nanopore pipeline nextflow reproducible-research reproducible-science pacbio polish illumina spades genome-assembly hybrid-assemblies unicycler flye canu pilon

Custom Nextflow scripts for microbiome assembly and AntiSMASH BGC analyses. Based around microbiome assemblers: Megahit & MetaSpades

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