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Fix PHP warnings during Chado install#1

Merged
spficklin merged 3 commits intotripal:7.x-3.xfrom
njbooher:7.x-3.x
Feb 11, 2016
Merged

Fix PHP warnings during Chado install#1
spficklin merged 3 commits intotripal:7.x-3.xfrom
njbooher:7.x-3.x

Commits