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Bug Fix

Issue #2287

Description

In the linked issue @carolyncaron reported that the new germplasm terms used for the core content types (added in #2265) did not make it into the automated test environment 🙈 This PR adds them in.

Testing?

This does not affect any existing tests in Tripal core and only affects the test environment. Right now the best way to test it is to do a careful code review 🤷‍♀️

Ideally I would also add a test that ensures all the terms represented in the YAML file are in our test environment so this doesn't happen again...

@laceysanderson laceysanderson linked an issue Sep 16, 2025 that may be closed by this pull request
@laceysanderson laceysanderson added bug - confirmed For issues where a core developer has confirmed a bug exists. Group 9 - Automated Testing Any issue related to automated testing including needed test cases, concerns, etc. Easy PR Review 😀 Small easy to review pull request Priority - Medium Any issue/PR which has a minor impact on system usability or is not often encountered. labels Sep 16, 2025
@laceysanderson laceysanderson self-assigned this Sep 16, 2025
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qltysh bot commented Sep 16, 2025

Diff Coverage: Not applicable. There was no coverage data reported for the files in this diff.

Total Coverage: This PR will increase coverage by 0.01%.

File Coverage Changes
Path File Coverage Δ Indirect
tripal/src/Plugin/TripalPubLibrary/TripalPubLibraryPubMed.php 0.5
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  • Total Coverage: Coverage for the whole repository, calculated as the sum of all File Coverage. Learn more.

  • File Coverage: Covered Lines divided by Covered Lines plus Missed Lines. (Excludes non-executable lines including blank lines and comments.)

    • Indirect Changes: Changes to File Coverage for files that were not modified in this PR. Learn more.

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@dsenalik dsenalik left a comment

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All good except the non-working URLs as noted

@dsenalik dsenalik added waiting on changes Added on a PR when further review is waiting on the requested changes to be made. Priority - Release Blocker Any issue/PR which needs to be addressed before another version of Tripal can be released. labels Sep 21, 2025
@laceysanderson laceysanderson removed the waiting on changes Added on a PR when further review is waiting on the requested changes to be made. label Sep 22, 2025
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Approved once tests all complete successfully!

@dsenalik dsenalik merged commit c9749c3 into 4.x Sep 22, 2025
16 checks passed
@dsenalik dsenalik deleted the tv4g9-2287-missingGermplasmTerms branch September 22, 2025 23:53
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Labels

bug - confirmed For issues where a core developer has confirmed a bug exists. Easy PR Review 😀 Small easy to review pull request Group 9 - Automated Testing Any issue related to automated testing including needed test cases, concerns, etc. Priority - Medium Any issue/PR which has a minor impact on system usability or is not often encountered. Priority - Release Blocker Any issue/PR which needs to be addressed before another version of Tripal can be released.

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Successfully merging this pull request may close these issues.

Missing germplasm cvterms in automated testing environment

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