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Commits on Mar 28, 2024

• Added new module for Toulligqc (#5131)

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  5 peopleauthored
  49423bb

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• Make `mosdepth` stub use `gzip` for `.gz` files (#5410)

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  awgymer

  authored
  30d3ca4

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• Update hmmsearch to 3.4 (#5408)

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  jasmezz

  authored
  b046a28

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• port `controlfreec-makegraph` to nf-test (#5393)

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  famosab

  and

  maxulysse

  authored
  26c0d83

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• port `controlfreec-freec` to nf-test (#5398)

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  famosab

  and

  maxulysse

  authored
  7b5827a

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• port `controlfreec-assesssignificance` to nf-test (#5396)

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  famosab

  authored
  e6c5689

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• port `controlfreec-makegraph2` to nf-test (#5392)

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  famosab

  authored
  c3f3383

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• new module: crabz (#5351)

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  camlloyd

  authored
  0494c99

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Commits on Mar 27, 2024

• nf-test + fix bcftools/filter (#5405)

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  nvnieuwk

  authored
  a389307

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• Migrate meryl unionsum nftest (#5404)

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  mahesh-panchal

  authored
  b7f584e

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• Adding Fast epistasis module (#5389)

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  DavideBag

  and

  lescai

  authored
  a3501bc

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• corrected bug in asereadcounter (#5403)

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  3 peopleauthored
  5f2f5ca

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• Meryl count and meryl histogram migration to nf-test (#5401)

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  mahesh-panchal

  and

  rodtheo

  authored
  c95215b

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Commits on Mar 26, 2024

• Update genomescope2 module and add nf-tests (#5399)

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  mahesh-panchal

  and

  rodtheo

  authored
  9bc4822

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• PLINK/GWAS additional output (#5387)

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  LorenzoS96

  and

  lescai

  authored
  faf85d1

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• Plink linkage disequilibrium additional output (#5388)

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  DavideBag

  and

  lescai

  authored
  a55519e

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• new module: Plink epistasis analysis (#5386)

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  DavideBag

  and

  lescai

  authored
  3234616

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• Add module for TaxonKit name2taxid (#4778)

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  3 peopleauthored
  e41aa10

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• Update-cellranger-modules (#5016)

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  4 peopleauthored
  e66183d

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• Update: GTDBTK/CLASSIFYWF (migrate to nf-test and only execute mv when dirs actually present) (#5390)

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  jfy133

  and

  mashehu

  authored
  0735b6d

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Commits on Mar 25, 2024

• Added MetaPlAn subworkflow (#5356)

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  3 peopleauthored
  4328ba3

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• port `vcftools` to nf-test (#5375)

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  famosab

  and

  jasmezz

  authored
  624ecdc

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• Update modules: rgi (#5383)

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  jasmezz

  authored
  dbbb0c5

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• Update condaforge/mambaforge Docker tag to v24 (#5381)

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  renovate[bot]

  authored
  93b7e1b

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Commits on Mar 24, 2024

• Update gecco + migrate to nf-test (#5372)

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  jasmezz

  and

  nf-core-bot

  authored
  f6867fb

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Commits on Mar 22, 2024

• Update learnmsa module to work with compressed files. (#5276)

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  3 peopleauthored
  6200770

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• New module: kraken2/build (#5212)

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  alxndrdiaz

  and

  jfy133

  authored
  db87ca5

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• Update kalign module to work with compressed files. (#5277)

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  lrauschning

  and

  luisas

  authored
  7afd02d

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• port `ensemblvep/download` to nf-test (#5373)

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  famosab

  authored
  ac46991

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• port `manta-germline` to nf-test (#5362)

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  famosab

  authored
  ebc1733

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• port `tiddit-sv` to nf-test and add `--threads` (#5371)

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  famosab

  authored
  6af4979

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Commits on Mar 21, 2024

• Decoupler module (#5317)

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  3 peopleauthored
  c455770

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• fix optional cram support in modules and migrate to nf-test (#5329)

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  tomiles

  and

  CMGG Cloud Team

  authored
  1943aa6

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• port `manta-tumoronly` to nf-test (#5363)

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  famosab

  authored
  8731a62

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• Dp24 pretextmap update (#5245)

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  DLBPointon

  authored
  9269b7b

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