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  1. TOPOSCORE TOPOSCORE Public

    Custom scoring of intestinal bacteria by the TOPOSCORE could represent a dynamic diagnosis tool of gut dysbiosis, that stratifies patients for microbiota-related interventions.

    R 3 1

  2. awesome-cancer-variant-databases awesome-cancer-variant-databases Public

    Forked from seandavi/awesome-cancer-variant-resources

    A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.

  3. awesome-single-cell awesome-single-cell Public

    Forked from seandavi/awesome-single-cell

    Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

  4. human_host_filtration human_host_filtration Public

    Forked from cguccione/human_host_filtration

    Pipeline which removes human DNA from microbial shotgun samples.

    Shell 1

  5. Mutographs_CRC Mutographs_CRC Public

    Forked from AlexandrovLab/Mutographs_CRC

    Scripts used for Díaz-Gay, dos Santos, Moody, et al. 2024 manuscript.

    R

  6. PDAC_blank_threshold PDAC_blank_threshold Public

    R script and related files to detect pooled blanks threshold at 99th percentile (or custom) starting from intratumoral microbiome data.

    R