argparse::args_t Class Reference

Public Member Functions
	args_t (int, const char **)
	~args_t ()

Public Attributes
FILE *	output
FILE *	reference
FILE *	input
ConfigParser *	scores
data_t	data_type
local_t	local_option
space_t	space_type
out_format_t	out_format
rc_t	reverse_complement
bool	quiet
bool	affine
bool	include_reference

Constructor & Destructor Documentation

args_t()

argparse::args_t::args_t	(	int	,
		const char **
	)

Constructor for args_t, which parses command-line arguments and sets up configuration options.

This constructor processes the command-line arguments, setting up the program's input, output, reference files, and various other configuration options such as data type, space type, and output format. If necessary, default values are assigned to some options.

Parameters

argc	The number of command-line arguments.
argv	The array of command-line arguments.

~args_t()

argparse::args_t::~args_t

(

)

Destructor for args_t, responsible for cleaning up any resources used (files or memory). It closes the input/output/reference files and deletes the scores object, if applicable.

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The documentation for this class was generated from the following files:

• src/argparse.hpp
• src/argparse.cpp