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Commits on Dec 3, 2025

• Merge pull request #13 from veg/develop

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• 1.0.5

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• Merge pull request #12 from hverdonk/alt-codes

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• Tweaks

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• Implemented support for NCBI table numbers in -c option

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• added vertebrate mitochondrial test data

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• added alternate code config files for all NCBI tables supported by hyphy

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• code comment cleanup

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Commits on Dec 2, 2025

• cawlign now accepts a genetic code and runs to completion

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Commits on Dec 1, 2025

• refactoring how genetic codes are stored and passed around

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• first pass adding a genetic code CLI option

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Commits on Sep 30, 2025

• Adding bioconda link

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Commits on Sep 19, 2025

• feat: Use max score for ambiguous codon resolution

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Commits on Sep 18, 2025

• v0.1.3

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Commits on Aug 26, 2025

• Resolving some codon alignment bugs. Adding support for ambig resolution for codon data

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Commits on Jul 28, 2025

• Adding function comments

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Commits on Jul 9, 2025

• Add -fsigned-char to build flags

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Commits on Jun 12, 2025

• Resolving issue #11

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• Resolving issue #11

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Commits on Apr 9, 2025

• Update Doxygen docs

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• Merge pull request #9 from veg/bioconda

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Commits on Apr 7, 2025

• add bioconda based install instructions

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• cmake req >3.10

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Commits on Feb 18, 2025

• Update Doxygen docs

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• fix README typo

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• update README

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• Update Doxygen docs

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• fix doxygen workflow

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• fix doxygen workflow

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• Merge pull request #8 from daniel-ji/main

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• work on JSDoc and Doxygen docs workflow & update README

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Commits on Oct 2, 2024

• Merge pull request #7 from stevenweaver/main

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• add latex output and github workflow

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• add latex output and github workflow

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• add latex output and github workflow

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