Hi there,

scaff_reads can only produce genome-BC_1.fastq.gz, but not genome-BC_2.fastq.gz. Here I list information as follows. Please help to fix it.

Thanks a lot

command line:

Scaff10X/src/scaff_reads -nodes 30 input.dat genome-BC_1.fastq.gz genome-BC_2.fastq.gz

# error information
58211 Segmentation fault Scaff10X/src/scaff-bin/scaff_BC-reads-2 MySample_S1_L001_R1_001.fastq.name MySample_S1_L001_R2_001.fastq MySample_S1_L001_R2_001.fastq.RC2 > try.out

cups & mem

#SBATCH --cpus-per-task=30
#SBATCH --mem=500G

input.dat

q1=MySample_S1_L001_R1_001.fastq (base size: 150Gb )
q2=MySample_S1_L001_R2_001.fastq (base size: 150Gb)

fastq

@CL100073098L1C001R001_7
CCCAATGGGACAATGGCAGGGCTGCCTATGGGGGAACCGGCATTGCTGTGAGGGTCGGGGGGACTATTGTATCTGTAAAGGATCAGCCATGGCCAGAAGTAGGTTTCTGAGCTGAGCGGTGACAGACTGTGCCCTTTTCCTGGCAGGAGG
+
@:GFFDFFFFF9FFFCFGFFDFGEFFE@FFFFFDEF@FF:F?DFGFF@FGFFFEDFEFFFGF;=FFFFGFFGGFFEBFCGE5F>BCFFBFFFFFFCF1BFAGFCDEFEF7FEFF,FGFADF3DBD=FFC84FFFGBFF7GF:DFDFF=EF
@CL100073098L1C001R001_9
CTGCGTTTCGCGGCATGCTTTCTAGAAGCTTAAGTTGTCTGTTTTTCCACCCTCCAAATTGTCTGACCACTTGTTGATAGTAGCAATTCCATTTTAATACCTTATGTCATAAGTATTTTAAGCAACCAAAAGATTCCTTTATTTTTTGCA
+
FFFGFFFFFGGB;FFGGFEGEGEEGGCFGEEE=GFFGEGEGFFGGCEGFGDFGBFFBBGFEGDFEFEGBEFBBGGG:GGBDFDFDGGGF?ECF@F@GEAEAEEEEEGF>GDFDEEEECFF,GFFFE1FGGBEGCEG@EAC?DCGEAEB5@