Hi,

I'm trying to run Scaff10X (4.2) to assemble a set of contigs with 10X reads. However, right at the start I get the following problem:

Input:

./scaff10x -nodes 30 -longread 1 -gap 100 -matrix 2000 -reads 10 -score 20 -edge 50000 -link 8 -block 50000 -plot barcode_lengtg.png myassembly.fa R1.test.fq.gz R2.test.fq.gz output.test.fa

Output:

Input target assembly file2: /home/Scaff10X/src/myassembly.fa
Input read1 file: /home/Scaff10X/src/R1.test.fq.gz
Input read2 file: /home/Scaff10X/src/R2.test.fq.gz
sh: 1: ./scaff-bin/scaff_screeN: not found
Error running command: ./scaff-bin/scaff_screeN /home/Scaff10X/src/myassembly.fa cleaN.fasta > try.out

However, scaff_screeN is right where it should be, and even if I type ./scaff-bin/scaff_screeN the prompt delivers a usage instruction, signalling the executable works: Usage: ./scaff-bin/scaff_screeN <input fast/aq file> <output fasta file>

I tried this in two separate Linux machines, both gave the same issue. Do you have any idea what could be happening?