Error executing align.com #417
Description
Since I was having difficulty with AreTomo, I tried to switch over to Imod, but I've been having similar issues here.
With this input file:
WarpTools ts_etomo_patches \
--settings /project/isilon/backup_4_all/backup_SMI/warp_preprocessing/scripts/warp_tiltseries.settings \
--angpix 10 \
--patch_size 500 \
--device_list 1 4
I got this error:
Connecting to workers...
Connected to 2 workers
Performing patch tracking alignment on all tilt-series...
0/25
Failed to import alignments:
Could not find 433-1-tomo02.xf
Checking the logs
2025-09-24 00:22:48.187 Batch run finished; no failures occurred
2025-09-24 00:22:53.119 Calculating projection parameters from patch tracking results in /project/isilon/backup_4_all/backup_SMI/warp_preprocessing/warp_
2025-09-24 00:22:53.133 Running 'submfg align.com'
2025-09-24 00:22:54.472 Python PID: 1261962
2025-09-24 00:22:55.657 Running align.com ... Error executing align.com^G
2025-09-24 00:22:55.661 ERROR: tiltalign -StandardInput: exited with status 174
2025-09-24 00:23:00.817 Finished for /project/isilon/backup_4_all/backup_SMI/warp_preprocessing/warp_tiltseries/433-1-tomo01.tomostar
2025-09-24 00:23:00.834 Execution took 834.689 seconds
Not sure if this is an issue with my pathway (e.g. couldn't find align.com) or it not being in my path? Not entirely sure why I'm receiving this error